PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021278200.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

E2F/DP

Protein Properties

Length: 465aa MW: 51939 Da PI: 4.4742

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021278200.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	87	1.4e-27	147	212	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++++e+gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+i+wkg XP_021278200.1 147 RYDSSLGLLTKKFINLIKQAEDGILDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 212 6899****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MSGSQASEQL KQSMQQQQQQ LQNQQQLKRQ LPFSMKPPFM APGGDYHRFP STEPRRIADQ 60 DAEAIVVKSP LKRKSDIADR EVESSEWTMP PGYTEVVSSP LQTPVSGKGG KAQKTSRLTK 120 SSKAGPQTPA SNLGSPGNNL TPSGPCRYDS SLGLLTKKFI NLIKQAEDGI LDLNKAADTL 180 EVQKRRIYDI TNVLEGIGLI EKKLKNRIQW KGLDVSRPGE VDENVATLQA EVENLSIEER 240 RLDEQIREMQ ERLRDLSEDE NNQKWLFVTE EDIKNLPCFQ NETLIAIKAP HGTTLEVPDP 300 DEAVDYPQRR YRIVLRSSMG PIDVYLVSQF EEKFEEIQGV DPPPNFPSTS GLNENPGTTM 360 VMEESRGKEI ETQGQDTNRM CSDLNASQDF VSGIMKIVPS DVDSDADYWL LSDPSVSITD 420 MWRTEPEVGW NEFGTLHDED YGMGAVSTPR PQTPPSNAAE VPSAN

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MSGSQASEQL KQSMQQQQQQ LQNQQQLKRQ LPFSMKPPFM APGGDYHRFP STEPRRIADQ  60
DAEAIVVKSP LKRKSDIADR EVESSEWTMP PGYTEVVSSP LQTPVSGKGG KAQKTSRLTK  120
SSKAGPQTPA SNLGSPGNNL TPSGPCRYDS SLGLLTKKFI NLIKQAEDGI LDLNKAADTL  180
EVQKRRIYDI TNVLEGIGLI EKKLKNRIQW KGLDVSRPGE VDENVATLQA EVENLSIEER  240
RLDEQIREMQ ERLRDLSEDE NNQKWLFVTE EDIKNLPCFQ NETLIAIKAP HGTTLEVPDP  300
DEAVDYPQRR YRIVLRSSMG PIDVYLVSQF EEKFEEIQGV DPPPNFPSTS GLNENPGTTM  360
VMEESRGKEI ETQGQDTNRM CSDLNASQDF VSGIMKIVPS DVDSDADYWL LSDPSVSITD  420
MWRTEPEVGW NEFGTLHDED YGMGAVSTPR PQTPPSNAAE VPSAN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22220.2	1e-177	E2F/DP family protein