PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021278112.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 791aa    MW: 88919.8 Da    PI: 4.9929
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021278112.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS374.51.4e-1144117851373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL+ cA+avs++d + a +lL++++e++sp gd +qRla++f+++L+arl +s++ + +  ++ ++++++ ++ l+a++ +  ++P+ k+  
  XP_021278112.1 411 LRTLLILCAQAVSADDRRTAGELLKQIKEHSSPLGDGTQRLAHFFANGLEARLDGSGTAIQNLYSSLASKKTTAADMLKAYQGYLCACPFKKLPI 505
                     5789****************************************************99999999999999999********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN++I   +e+++++Hi+Df+i +G+QWp L+q L++Rp+gpp+lRiTg++ p+ g   +e++eetg+rL++++++++vpfe+n+++a+++e+
  XP_021278112.1 506 FFANKTICHMAEKASTLHIVDFGILYGFQWPILIQHLSKRPGGPPKLRITGIEIPQRGfrPAERIEETGRRLERYCKRFDVPFEYNPIAAQNWET 600
                     ********************************************************99************************************* PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+++++++E+laVn+ ++ ++llde++ ++ +r++vLkl+++++P+++v++ ++ ++n++ Fl+rf eal   sa+fd++e++lpre+ +r 
  XP_021278112.1 601 IQVEDIKINSNEMLAVNCLFRFKNLLDETAGVDCPRNAVLKLIRKMNPDIFVHSISNGSYNAPFFLTRFREALFSLSAIFDMFENTLPREEPARL 695
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                       Ere+ gre++nvvaceg++r+er et+++W+ r  +aGFkp+pl+++ ++++++ l+  + + + ++e+++++++gWk+r L++ S+W
  XP_021278112.1 696 LFEREFYGREAMNVVACEGSARVERPETYKQWQVRTIRAGFKPLPLNQELMETVRAKLKSWYHKDFVIDEDNHWMLQGWKGRILYASSCW 785
                     **************************************************************888************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    
MVMDPKFTEF TDYINGFRVE DDTHLFTSGQ YPNFTNGLEF NVPSPDLGFM SVNVPVIPPT  60
PDPGISVPPI SVSSDGSSFS ASTGWSPDGE SSSPSDDSDS TDPVLKYIRQ MLMEENMEDK  120
PYMFNDYLAL EDTEKSLYEV LGEQYPPTNQ PQPFLNVNVE SPDSNLSGNS RDYGSNSNSS  180
TSIGTSNGTS NYVDHWGVGE AVEHAPSLLQ APLSGDYHFQ STLQQPSSQF SVNSTNSLSN  240
MGNGLMESSV SELLAQNIFS DKESVLQFQR GFEEASKFLP SSNQLIIDLE SNTFPMGQKG  300
RVPNLVVKVE KDERENSPDG LRGRKNHERD DGDLEEERSN KQSAVYTEES DLSDIFDKVL  360
LCTDGKAMCG FNKTVQQGET KTLLQKEQSN GSSVGKTRSR KQEKKKETVD LRTLLILCAQ  420
AVSADDRRTA GELLKQIKEH SSPLGDGTQR LAHFFANGLE ARLDGSGTAI QNLYSSLASK  480
KTTAADMLKA YQGYLCACPF KKLPIFFANK TICHMAEKAS TLHIVDFGIL YGFQWPILIQ  540
HLSKRPGGPP KLRITGIEIP QRGFRPAERI EETGRRLERY CKRFDVPFEY NPIAAQNWET  600
IQVEDIKINS NEMLAVNCLF RFKNLLDETA GVDCPRNAVL KLIRKMNPDI FVHSISNGSY  660
NAPFFLTRFR EALFSLSAIF DMFENTLPRE EPARLLFERE FYGREAMNVV ACEGSARVER  720
PETYKQWQVR TIRAGFKPLP LNQELMETVR AKLKSWYHKD FVIDEDNHWM LQGWKGRILY  780
ASSCWIPAQE S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein