PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021278059.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MYB_related
Protein Properties Length: 297aa    MW: 32916.9 Da    PI: 10.2862
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021278059.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.51.2e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G g W+tI +          R+  ++k++w++
   XP_021278059.1  5 KQKWTAEEEAALKAGVIKHGAGKWRTILKDPEfsgvlYLRSNVDLKDKWRN 55
                     79***********************************88***********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MGAPKQKWTA EEEAALKAGV IKHGAGKWRT ILKDPEFSGV LYLRSNVDLK DKWRNMSVMA  60
NGWGSRDKAR LAVKRTPSIL KQEDGAMALT VVPSDEEIAD AKPISVPSTT VQIPTSTKRS  120
IVRLDNLIME AITTLKEPGG SNKTTIAAYI EEQYWAPPDF KRLLSAKLKY LTACGRLIKV  180
KRRYRIAPAL SFSDRRRNHP MLFLEGRQRV SPRFDRNDFH ILTKSQIDLE LAKMRTMTPQ  240
EAAAAAARAV AEAEAAITEA EEAAREAEVA EADAEAAQAF AEAAMKTLKG RNNQKVV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.11e-105MYB_related family protein