PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021278019.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 705aa    MW: 79837 Da    PI: 6.8865
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021278019.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS385.85.1e-1183327013374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL++cA+av+ +d++ a++lL+++++++s +gd +qRla+yf++AL++rla+++   y  l +++ts    +++l+a+ +++ ++P+ k+s++ 
  XP_021278019.1 332 SLLTQCAQAVTINDQRTANELLKQVRQHSSASGDGTQRLAHYFANALKTRLAGNGAPSYLPLLSNRTS---AADVLKAYGVYVLACPFKKMSNFY 423
                     79***************************************************777777555555554...99********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aN+ I++ +e+++++Hi+Df+i +G+QWp+L+q L++R++gpp+lRiTg++ p++g   +e++eetg+rL++++e+++vpfe+nv +ak++e+++
  XP_021278019.1 424 ANKKIMQVAEKATTLHIVDFGICYGFQWPCLIQRLSARANGPPKLRITGIEFPQPGfrPAERVEETGRRLKRYCERFQVPFEYNV-IAKKWETIQ 517
                     *******************************************************9****************************9.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     leeLr++++E+++Vn++++l++l+d++v+ +s+rd+vLkl++s++P+++++   +  +n++ F++rf eal ++sa fd +ea+++re+ +r++ 
  XP_021278019.1 518 LEELRIDKDEVVVVNCMYRLKNLPDDTVAPTSARDTVLKLIRSINPQLFIHGAANGTYNAPFFVTRFREALFHFSAQFDIFEANVSREDPQRMMF 612
                     *********************************************************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     E+e++gr+i+nv+aceg+er+er et+++W++r ++aGFk+vpl+++  k++  l+r  + + + v+ +  ++++gWk+r ++ +++W+
  XP_021278019.1 613 EKEVIGRDIMNVIACEGTERVERPETYKQWQARTMRAGFKQVPLDQELLKKVTNLVRSNYHRDFVVDVDGRWMLQGWKGRVIYGLTCWK 701
                     ************************************************************999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    
MDTLFQDFPS SMYGFKFDHG SVPVYSNHNL VNGFKESPER IVPNPPSLPT SPDSPFDSAS  60
SSGVSSDGHP LDNIPFANEM LKYINEMLME EDIDEKTCML QDCLALQAAE KSFYEVLGHE  120
YPLSADRLSP CTGQNGYYLD DNLTERSSIG SSNSYTTATT LVESSGKNRP GEVKSSYIQT  180
SLIDSLERTF LVPDLQRETT LESFRHFRTG IGEASKSSLN GDKVLLAPES NLSRPSVSDG  240
RYQSPSGTRG RKNYQREDDD YLEEGRSNKQ SAISLEDSDQ SDMFDDVLLC KGENDDSPRS  300
SLNGNLQLKW SNVGTTRRKK NDKKSEVVDL WSLLTQCAQA VTINDQRTAN ELLKQVRQHS  360
SASGDGTQRL AHYFANALKT RLAGNGAPSY LPLLSNRTSA ADVLKAYGVY VLACPFKKMS  420
NFYANKKIMQ VAEKATTLHI VDFGICYGFQ WPCLIQRLSA RANGPPKLRI TGIEFPQPGF  480
RPAERVEETG RRLKRYCERF QVPFEYNVIA KKWETIQLEE LRIDKDEVVV VNCMYRLKNL  540
PDDTVAPTSA RDTVLKLIRS INPQLFIHGA ANGTYNAPFF VTRFREALFH FSAQFDIFEA  600
NVSREDPQRM MFEKEVIGRD IMNVIACEGT ERVERPETYK QWQARTMRAG FKQVPLDQEL  660
LKKVTNLVRS NYHRDFVVDV DGRWMLQGWK GRVIYGLTCW KPVRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein