PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021277454.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 549aa MW: 58813.6 Da PI: 9.6196

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021277454.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.4e-05	79	101	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_021277454.1 79 FICEICNKGFQRDQNLQLHRRGH 101 89*******************88 PP
2	zf-C2H2	12.4	0.00049	156	178	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + XP_021277454.1 156 WKCEKCSKRYAVQSDWKAHSKIC 178 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence
MMKGLVVEEN MSNLTSTSGE VSASSGTRIE TGTVFPQQSF APTYQAPPSK KKRSLPGNPD 60 PDAEVIALSP MTLMTTNRFI CEICNKGFQR DQNLQLHRRG HNLPWKLKQR TNKEVIRKKV 120 YVCPEPTCVH HDPARALGDL TGIKKHFCRK HGEKKWKCEK CSKRYAVQSD WKAHSKICGT 180 REYRCDCGTI FSRRDSFITH RAFCDALAEE SARAITAANP RLSSHQPGSS VSHMTNLQPQ 240 LHXSLHALSV KREQDRPFNA XVPADSIHPW LTCPSGVGAG PGPPSMNLSS SSPLFFDHPL 300 ARNENPSQNP SSTLPPFQAP TASPHMSATA LLQKAAQMGV TISKPLQSAA AMQRPHQQXH 360 MSGTAGFTGS TSASLATSTA GSGLGLSAXE ELGSGFPHGL ASFGNKAAAT SGFMEQASAT 420 NSTAGAGXGA AAPSLLHDMM SSLSSTSGFD GSSSFEQSFN GILDTKLGNS TFQQTLSKTT 480 ESQLSRSHRE GRGSSASSNI GGNDGLTRDF LGLKAFPHGD FPNLAGLNRI NSSSAYGQQN 540 QHSQTPWQG

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence

MMKGLVVEEN MSNLTSTSGE VSASSGTRIE TGTVFPQQSF APTYQAPPSK KKRSLPGNPD  60
PDAEVIALSP MTLMTTNRFI CEICNKGFQR DQNLQLHRRG HNLPWKLKQR TNKEVIRKKV  120
YVCPEPTCVH HDPARALGDL TGIKKHFCRK HGEKKWKCEK CSKRYAVQSD WKAHSKICGT  180
REYRCDCGTI FSRRDSFITH RAFCDALAEE SARAITAANP RLSSHQPGSS VSHMTNLQPQ  240
LHXSLHALSV KREQDRPFNA XVPADSIHPW LTCPSGVGAG PGPPSMNLSS SSPLFFDHPL  300
ARNENPSQNP SSTLPPFQAP TASPHMSATA LLQKAAQMGV TISKPLQSAA AMQRPHQQXH  360
MSGTAGFTGS TSASLATSTA GSGLGLSAXE ELGSGFPHGL ASFGNKAAAT SGFMEQASAT  420
NSTAGAGXGA AAPSLLHDMM SSLSSTSGFD GSSSFEQSFN GILDTKLGNS TFQQTLSKTT  480
ESQLSRSHRE GRGSSASSNI GGNDGLTRDF LGLKAFPHGD FPNLAGLNRI NSSSAYGQQN  540
QHSQTPWQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	106	119	KLKQRTNKEVIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-120	C2H2 family protein