PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021277327.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family LBD
Protein Properties Length: 242aa    MW: 26564.4 Da    PI: 7.6611
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021277327.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.41.3e-39151141100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     aCaaCk++rrkC+++C lap fpa+++k+f n+hklFG+sn++k++++l++ +r +am+s+v+eA+ ra+dPv G++g+i++l+ q++ +kael+
  XP_021277327.1  15 ACAACKYQRRKCTRNCLLAPFFPAHHQKDFLNAHKLFGVSNIVKIIRNLDPPQRLIAMKSIVFEANTRANDPVGGCYGIISDLKMQIDWVKAELD 109
                     7*********************************************************************************************9 PP

          DUF260  96 llkee 100
                     l+ ++
  XP_021277327.1 110 LVLHQ 114
                     98776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MQRPRGNNCS AGSPACAACK YQRRKCTRNC LLAPFFPAHH QKDFLNAHKL FGVSNIVKII  60
RNLDPPQRLI AMKSIVFEAN TRANDPVGGC YGIISDLKMQ IDWVKAELDL VLHQLAICKA  120
QTAAAAAAAS QQQSGQQQMV QVGDHEANAI QCLEGLTVYD AMPAHCEGEC NLVQGNYDDV  180
GEDIKPLLPV FEVGSFPFDS KVSIQCSDKL VSKEEVRSIQ HELKHDLKSA ASLFTLTNGK  240
NR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.16e-42LBD family protein