PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021276878.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family NF-YA
Protein Properties Length: 301aa    MW: 33839.1 Da    PI: 9.3917
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021276878.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.63.7e-32144200158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     d p+YVNaKQy++Il+RRq Rakle+++kl  k+rkpylheSRh hAl+R RgsgGrF
  XP_021276878.1 144 DGPIYVNAKQYHGILRRRQYRAKLEAQNKL-VKARKPYLHESRHLHALNRVRGSGGRF 200
                     57****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MFLLLFFCDI SRKSRRKKKE IKINLKREKS SGRVSREGTC LSSFQQNNTL LLLHASSDPI  60
GQDESCGKDI EGQMKPVFML NNPNTVFSPS HSNYNHSMAY ARNPYADAYF GGLFTPYGQQ  120
AIIQPQMAGG APTRIPLPLD LDEDGPIYVN AKQYHGILRR RQYRAKLEAQ NKLVKARKPY  180
LHESRHLHAL NRVRGSGGRF LSTKKLQQSD PTFNTSSHCI SDTSCLDQKN TRSEFESRCS  240
HTAEYVGSST SCSDITSVSN SECNFQQPEH RFSDISPHVG SHMQNSVSMC NGIQHCASVV  300
R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11220RKSRRKKKE
21520RRKKKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.21e-43NF-YA family protein