PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021276688.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MIKC_MADS

Protein Properties

Length: 236aa MW: 27327.1 Da PI: 5.2143

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021276688.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	73.3	2e-23	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ie+++nrqvtfsk r+g+lKK +E+SvLCdae+ +iifsstg+l+ y++ XP_021276688.1 9 KLIEDTTNRQVTFSKFRAGLLKKDHEVSVLCDAEIGLIIFSSTGELFAYCT 59 569**********************************************96 PP
2	K-box	47.5	7.7e-17	78	164	10	96
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 ++ +++ lq+ ++k ++e + + ++ hl G +L+sL++++L++LeqqLe s++k+R++K++ll+ q+++l + ++++ en++L + XP_021276688.1 78 QTPQQSDLQKMSEKQRRESHCSEPSLNHLNGSELNSLKIEDLEELEQQLECSINKVRARKEQLLKLQMDNLERNLEKMEAENNQLCH 164 555667777778888888888888999*********************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence
MGRSKMEMKL IEDTTNRQVT FSKFRAGLLK KDHEVSVLCD AEIGLIIFSS TGELFAYCTQ 60 PLSMEQIIER YQLAKGTQTP QQSDLQKMSE KQRRESHCSE PSLNHLNGSE LNSLKIEDLE 120 ELEQQLECSI NKVRARKEQL LKLQMDNLER NLEKMEAENN QLCHWIEGKQ VSSRQQQVPI 180 EANMLEEKQQ QVLNQFPFIG EEQPISMLQL VSLPPSRPYL CQPMQSNLQE ANTHHQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23260.2	4e-38	MIKC_MADS family protein