PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021276680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 236aa MW: 27327.1 Da PI: 5.2143 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 73.3 | 2e-23 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ie+++nrqvtfsk r+g+lKK +E+SvLCdae+ +iifsstg+l+ y++ XP_021276680.1 9 KLIEDTTNRQVTFSKFRAGLLKKDHEVSVLCDAEIGLIIFSSTGELFAYCT 59 569**********************************************96 PP | |||||||
2 | K-box | 47.5 | 7.7e-17 | 78 | 164 | 10 | 96 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 ++ +++ lq+ ++k ++e + + ++ hl G +L+sL++++L++LeqqLe s++k+R++K++ll+ q+++l + ++++ en++L + XP_021276680.1 78 QTPQQSDLQKMSEKQRRESHCSEPSLNHLNGSELNSLKIEDLEELEQQLECSINKVRARKEQLLKLQMDNLERNLEKMEAENNQLCH 164 555667777778888888888888999*********************************************************976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence |
MGRSKMEMKL IEDTTNRQVT FSKFRAGLLK KDHEVSVLCD AEIGLIIFSS TGELFAYCTQ 60 PLSMEQIIER YQLAKGTQTP QQSDLQKMSE KQRRESHCSE PSLNHLNGSE LNSLKIEDLE 120 ELEQQLECSI NKVRARKEQL LKLQMDNLER NLEKMEAENN QLCHWIEGKQ VSSRQQQVPI 180 EANMLEEKQQ QVLNQFPFIG EEQPISMLQL VSLPPSRPYL CQPMQSNLQE ANTHHQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 4e-38 | MIKC_MADS family protein |