PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021276675.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HSF

Protein Properties

Length: 470aa MW: 52788.9 Da PI: 4.6098

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021276675.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.4	7.1e-36	131	222	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k++e++ed+e++ ++sws n nsf+v+d+++f++++LpkyFkh+nf+SF+RQLn+YgF+k+++++ weF+++ F++gkk+ll++ XP_021276675.1 131 FLRKTFEMVEDPETDPIVSWSVNRNSFIVWDSHKFSENLLPKYFKHKNFSSFIRQLNTYGFRKIDSDR---------WEFANEGFQRGKKHLLKS 216 9******************999*************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 ikr+++ XP_021276675.1 217 IKRRSR 222 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence
MVVPDSGGGE EGFGLSYTAA FLKESKKMED EPDNENQSYS NIVVKEEPVA APAAVTEGSA 60 ATCGGGDQVA LLKSVKEEQG EEDDEEMGIV DDMMNGGDCN KISNNGSSSS SSSDVSPKPM 120 EGLLESGPPP FLRKTFEMVE DPETDPIVSW SVNRNSFIVW DSHKFSENLL PKYFKHKNFS 180 SFIRQLNTYG FRKIDSDRWE FANEGFQRGK KHLLKSIKRR SRYNKQQQGG VICANSSTSF 240 GLEAELEILK KDQSALQLEV LKLRQQQEES NHQLSVVQER IRFAECRQQQ MCNFFGKIAK 300 FPNFIQQLIQ KRKQQKKDLD EGEFSKKRKL LETQVTKSLT EAMGTDQSVK CSNQVDQGRL 360 ESMQPDEFSK YLPDGMENNN QMKNEFSASM EDGLCCSLQD QKSNVPEMSS VYHVMSENLL 420 GESSGVDKVA NEELSVNDSK IYLELEDLIN WKPCSWGGFA SELVEQTGCV

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence

MVVPDSGGGE EGFGLSYTAA FLKESKKMED EPDNENQSYS NIVVKEEPVA APAAVTEGSA  60
ATCGGGDQVA LLKSVKEEQG EEDDEEMGIV DDMMNGGDCN KISNNGSSSS SSSDVSPKPM  120
EGLLESGPPP FLRKTFEMVE DPETDPIVSW SVNRNSFIVW DSHKFSENLL PKYFKHKNFS  180
SFIRQLNTYG FRKIDSDRWE FANEGFQRGK KHLLKSIKRR SRYNKQQQGG VICANSSTSF  240
GLEAELEILK KDQSALQLEV LKLRQQQEES NHQLSVVQER IRFAECRQQQ MCNFFGKIAK  300
FPNFIQQLIQ KRKQQKKDLD EGEFSKKRKL LETQVTKSLT EAMGTDQSVK CSNQVDQGRL  360
ESMQPDEFSK YLPDGMENNN QMKNEFSASM EDGLCCSLQD QKSNVPEMSS VYHVMSENLL  420
GESSGVDKVA NEELSVNDSK IYLELEDLIN WKPCSWGGFA SELVEQTGCV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	214	220	LKSIKRR
2	311	329	KRKQQKKDLDEGEFSKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	3e-79	HSF family protein