PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021276101.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family ARF
Protein Properties Length: 682aa    MW: 76132 Da    PI: 6.7332
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021276101.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.82.3e-24114214198
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+kvlt sd++++g +++ +k+a+e+     +++ + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++
  XP_021276101.1 114 FCKVLTASDTSTHGGFSVLRKHATEClppldMNQATPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGENG 206
                     99****************************9555556679************************************************..44999 PP

                     ..EEEEE- CS
              B3  91 elvvkvfr 98 
                     el+v+v+r
  XP_021276101.1 207 ELRVGVRR 214
                     9*****98 PP
2Auxin_resp105.94.6e-35240319183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+st++ F v+Y+Pr+  s+F++ ++++++al++k++vGmRfkm+fe+eds+err+sGt+vgv+d++p +W++SkWrsLk
  XP_021276101.1 240 ASHAVSTQTLFVVYYKPRT--SQFIIGLNRYLEALNNKFAVGMRFKMRFEGEDSPERRFSGTIVGVEDFSP-HWKDSKWRSLK 319
                     789***************6..9*************************************************.*********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    
MIGDGGDDLY MELWKLCAGP LVEVPRANER VYYFPQGHME QLEASTNQEL NQRIPLFNLP  60
PKILCRVVHI QLLAEQETDE VYAQITLLPE ANQPEPTSPD QSPPESQRPT VHSFCKVLTA  120
SDTSTHGGFS VLRKHATECL PPLDMNQATP TQELVAKDLH GYEWRFKHIF RGQPRRHLLT  180
TGWSTFVTSK RLVAGDSFVF LRGENGELRV GVRRVARQQT SMPSSVISSQ SMHLGVLATA  240
SHAVSTQTLF VVYYKPRTSQ FIIGLNRYLE ALNNKFAVGM RFKMRFEGED SPERRFSGTI  300
VGVEDFSPHW KDSKWRSLKV QWDEPASIPR PDRVSPWEIE PFAAPMPPTL GQPLAAKNKR  360
PRPPTEIPAL DLSSTASAPW NSGVMHSHDL ARRNVTAEAK RNENHVLWHH MQTDMNSSCG  420
SISKAQNEGS WLSSPGMSVS QHLFPDGRED SKSVSGWPVL SGFSKPQLKN DSTFDPIEKV  480
KKFETASSCR LFGIELINHS ASSTPLERTP TQLSTMTGGS TEGHGPSSLS PAGSDQKSEI  540
SKDSKEKKQE QLQVSAKEIQ SRQSCSSSTR SRTKVQMQGV AVGRAVDLTM LEGYDQLIDE  600
LEEMFDIKGG LRPRNKWEIV YTDDEGDMML VGDDPWLEFC NMVRRIFICS SQDVKKMSTG  660
SKLPMASIEV EGTVISSDSA EN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359363KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0ARF family protein