PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021276093.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family ARF
Protein Properties Length: 693aa    MW: 77283.1 Da    PI: 6.8273
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021276093.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.82.4e-24130230198
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+kvlt sd++++g +++ +k+a+e+     +++ + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++
  XP_021276093.1 130 FCKVLTASDTSTHGGFSVLRKHATEClppldMNQATPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGENG 222
                     99****************************9555556679************************************************..44999 PP

                     ..EEEEE- CS
              B3  91 elvvkvfr 98 
                     el+v+v+r
  XP_021276093.1 223 ELRVGVRR 230
                     9*****98 PP
2Auxin_resp105.94.7e-35256335183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+st++ F v+Y+Pr+  s+F++ ++++++al++k++vGmRfkm+fe+eds+err+sGt+vgv+d++p +W++SkWrsLk
  XP_021276093.1 256 ASHAVSTQTLFVVYYKPRT--SQFIIGLNRYLEALNNKFAVGMRFKMRFEGEDSPERRFSGTIVGVEDFSP-HWKDSKWRSLK 335
                     789***************6..9*************************************************.*********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    
MMANRGGSFS QTNNVSSEGD GGDDLYMELW KLCAGPLVEV PRANERVYYF PQGHMEQLEA  60
STNQELNQRI PLFNLPPKIL CRVVHIQLLA EQETDEVYAQ ITLLPEANQP EPTSPDQSPP  120
ESQRPTVHSF CKVLTASDTS THGGFSVLRK HATECLPPLD MNQATPTQEL VAKDLHGYEW  180
RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDSFVFLRGE NGELRVGVRR VARQQTSMPS  240
SVISSQSMHL GVLATASHAV STQTLFVVYY KPRTSQFIIG LNRYLEALNN KFAVGMRFKM  300
RFEGEDSPER RFSGTIVGVE DFSPHWKDSK WRSLKVQWDE PASIPRPDRV SPWEIEPFAA  360
PMPPTLGQPL AAKNKRPRPP TEIPALASAP WNSGVMHSHD LARRNVTAEA KRNENHVLWH  420
HMQTDMNSSC GSISKAQNEG SWLSSPGMSV SQHLFPDGRE DSKSVSGWPV LSGFSKPQLK  480
NDSTFDPIEK VKKFETASSC RLFGIELINH SASSTPLERT PTQLSTMTGG STEGHGPSSL  540
SPAGSDQKSE ISKDSKEKKQ EQLQVSAKEI QSRQSCSSST RSRTKVQMQG VAVGRAVDLT  600
MLEGYDQLID ELEEMFDIKG GLRPRNKWEI VYTDDEGDMM LVGDDPWLEF CNMVRRIFIC  660
SSQDVKKMST GSKLPMASIE VEGTVISSDS AEN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1375379KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0ARF family protein