PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021275761.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 962aa MW: 105617 Da PI: 7.8776

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021275761.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.6	1.9e-07	511	531	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C +++ G+C +Gd C F+H XP_021275761.1 511 PCINYMTKGFCGRGDDCLFSH 531 7******************** PP

Sequence ? help Back to Top
Protein Sequence Length: 962 aa Download sequence
MFTPHRRSHL RSGTYHNLVR LISLCYGDSP LATAPPIIPV HRTRDNGSNQ SEPGGNDIRE 60 PGESIVQDSS KPANLPAQEG TVVDAGFKGA VFKDSGFSDT QMVLDEIEQI MEIEESQNFV 120 NGNDLMVCSS TEGTGFQDGE IGREQSLMNE LENIMKGNED YDNSNNCLAA SLGQNLGDNC 180 VSVSMNNQEE RIELPLVVAE ESGTAVQPQV YMEGDNQKII EAFDFSLDKS LIVEVSKSSE 240 KVEDQSSVLK SNAMHEKIGI QQKEMELEKF VSSNDRMPSP GQMVENGELE EGEIFGDIQL 300 VNESVDILLE DAVVSEKNGE EKQVDAFDDK VLHCNEESKA NNKDSEITSF NMNIAQIANR 360 VSEVEFEGSE RDQMVSEHGR MHRKKGTKQS GDENQVIKSK KKKDDGVCNK TKQGSNPAEK 420 KEKKKRNKRK KRAEKNQQLG VKRLKLQTVL KPKAVTYCRH YLKGRCYEGE KCKYSHDTVP 480 LTKSQPCSHF ARQSCMKGDE CPFDHQLSKY PCINYMTKGF CGRGDDCLFS HKMSPEGGVA 540 SLSSARELQL KSSLHGDSEM RLSIRKNVDA SSCSIRAFSQ KSKEQIVAGT PTKTPDLDCK 600 GVNSLFVSKS SMAESSKRNR GSSFQNMKES GKVGIQSNLS TSGVNSPCAS KPSLKMNKSG 660 RLGIQANQSE SGTIQNVNDS PMRKTEVVPR GINFLSFGKS SLEDTTSKVS LALNRGVGYK 720 QHPSENEGDR GKLSNQTSQS TSSTDQRKTD PTVVPLGINF LSLGKSGNSR SNEASIPSSS 780 DIVNSGPLQK SNYASDKRHN TSAISYKSPV SPRTSGQSSE WVPHKNTPNT AQKAIISTLA 840 FAKKFDDVNS RSFHESQHLS DKQYSSNPIP WKMAAYPLAM GQSSEKISHK NTPNSVQKAL 900 MSTLAFAAKF ESGMKKNQSA VSTGVKSETT DSRNDEGSKS DLAETSKLLD ILSSVGRKIK 960 QM

Sequence ? help Back to Top

Protein Sequence Length: 962 aa Download sequence

MFTPHRRSHL RSGTYHNLVR LISLCYGDSP LATAPPIIPV HRTRDNGSNQ SEPGGNDIRE  60
PGESIVQDSS KPANLPAQEG TVVDAGFKGA VFKDSGFSDT QMVLDEIEQI MEIEESQNFV  120
NGNDLMVCSS TEGTGFQDGE IGREQSLMNE LENIMKGNED YDNSNNCLAA SLGQNLGDNC  180
VSVSMNNQEE RIELPLVVAE ESGTAVQPQV YMEGDNQKII EAFDFSLDKS LIVEVSKSSE  240
KVEDQSSVLK SNAMHEKIGI QQKEMELEKF VSSNDRMPSP GQMVENGELE EGEIFGDIQL  300
VNESVDILLE DAVVSEKNGE EKQVDAFDDK VLHCNEESKA NNKDSEITSF NMNIAQIANR  360
VSEVEFEGSE RDQMVSEHGR MHRKKGTKQS GDENQVIKSK KKKDDGVCNK TKQGSNPAEK  420
KEKKKRNKRK KRAEKNQQLG VKRLKLQTVL KPKAVTYCRH YLKGRCYEGE KCKYSHDTVP  480
LTKSQPCSHF ARQSCMKGDE CPFDHQLSKY PCINYMTKGF CGRGDDCLFS HKMSPEGGVA  540
SLSSARELQL KSSLHGDSEM RLSIRKNVDA SSCSIRAFSQ KSKEQIVAGT PTKTPDLDCK  600
GVNSLFVSKS SMAESSKRNR GSSFQNMKES GKVGIQSNLS TSGVNSPCAS KPSLKMNKSG  660
RLGIQANQSE SGTIQNVNDS PMRKTEVVPR GINFLSFGKS SLEDTTSKVS LALNRGVGYK  720
QHPSENEGDR GKLSNQTSQS TSSTDQRKTD PTVVPLGINF LSLGKSGNSR SNEASIPSSS  780
DIVNSGPLQK SNYASDKRHN TSAISYKSPV SPRTSGQSSE WVPHKNTPNT AQKAIISTLA  840
FAKKFDDVNS RSFHESQHLS DKQYSSNPIP WKMAAYPLAM GQSSEKISHK NTPNSVQKAL  900
MSTLAFAAKF ESGMKKNQSA VSTGVKSETT DSRNDEGSKS DLAETSKLLD ILSSVGRKIK  960
QM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	383	403	RKKGTKQSGDENQVIKSKKKK
2	400	425	KKKKDDGVCNKTKQGSNPAEKKEKKK
3	400	430	KKKKDDGVCNKTKQGSNPAEKKEKKKRNKRK
4	423	453	KKKKDDGVCNKTKQGSNPAEKKEKKKRNKRK