PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021275393.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family ARF
Protein Properties Length: 915aa    MW: 101397 Da    PI: 6.5943
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021275393.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.8e-24128229199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_021275393.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 218
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_021275393.1 219 KNQLLLGIRRA 229
                     9999****997 PP
2Auxin_resp121.65.8e-40254337183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  XP_021275393.1 254 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 337
                     79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 915 aa     Download sequence    
MRLSSSGFNQ QTQEGEKKCL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDV YLLPAELGNP  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS QQPPAQELIA RDLHDNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAS RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYH TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL  360
TTFPMYPSPF PLRLKRPWPS ALPSFHAFKD GDMSINSQLM WLQGGVGDQG IQSLNFQGFG  420
VAPWIQPRLD TSSLPGVQPY LYQAMGGAAF QDMRTVDSSK IGSQSLLQFQ QPQNTSNGTP  480
ALIQRQMLQQ SQTQNAFLHS FQENQTTAQV QLLQQLQRPH LYNDQRQQHQ HQHQHQHQPQ  540
HHQQQQSQQT QQLPQLSVPQ QISNVISAFP STSASQAQSS SLPVVASQCQ QQTFPDSIGN  600
SIATSDVSSM HSILGSLSQN GASHLLNLNG SNPIISSSSL LSKPVAVQPQ VSSGATNCVL  660
PQVEQLGTAQ SNVSELSNLL PPFPGREYSA YHGSTDPQNN LLFGVSIDSS SLMLQHGMTN  720
MKNFGNENDS LSLPYAASNF TSASGTDFPL NSDMTTSSCV DESGYLQSSE NVDQVNPTTG  780
TFVKVHKSGS FGRSLDISKF SSYDELRCEL ARMFGLEGQL EDPQRSGWQL VFVDRENDIL  840
LLGDDPWQEF VNNVWYIKIL SPLEVQQMGK EVLNPAASVP SQRLTHSSNN CDDYMSRQDL  900
RGSGNGLASM GSLEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein