PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021275391.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family ARF
Protein Properties Length: 953aa    MW: 105784 Da    PI: 6.6437
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021275391.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.18.2e-24128229199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_021275391.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 218
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_021275391.1 219 KNQLLLGIRRA 229
                     9999****997 PP
2Auxin_resp121.56.1e-40254337183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  XP_021275391.1 254 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 337
                     79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 953 aa     Download sequence    
MRLSSSGFNQ QTQEGEKKCL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDV YLLPAELGNP  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS QQPPAQELIA RDLHDNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAS RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYH TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL  360
TTFPMYPSPF PLRLKRPWPS ALPSFHGMLE SLLRMVEITH IASRLHLKLG VFLIYTESIY  420
FVLPAFKDGD MSINSQLMWL QGGVGDQGIQ SLNFQGFGVA PWIQPRLDTS SLPGVQPYLY  480
QAMGGAAFQD MRTVDSSKIG SQSLLQFQQP QNTSNGTPAL IQRQMLQQSQ TQNAFLHSFQ  540
ENQTTAQVQL LQQLQRPHLY NDQRQQHQHQ HQHQHQPQHH QQQQSQQTQQ LPQLSVPQQI  600
SNVISAFPST SASQAQSSSL PVVASQCQQQ TFPDSIGNSI ATSDVSSMHS ILGSLSQNGA  660
SHLLNLNGSN PIISSSSLLS KPVAVQPQVS SGATNCVLPQ VEQLGTAQSN VSELSNLLPP  720
FPGREYSAYH GSTDPQNNLL FGVSIDSSSL MLQHGMTNMK NFGNENDSLS LPYAASNFTS  780
ASGTDFPLNS DMTTSSCVDE SGYLQSSENV DQVNPTTGTF VKVHKSGSFG RSLDISKFSS  840
YDELRCELAR MFGLEGQLED PQRSGWQLVF VDRENDILLL GDDPWQEFVN NVWYIKILSP  900
LEVQQMGKEV LNPAASVPSQ RLTHSSNNCD DYMSRQDLRG SGNGLASMGS LEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein