PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021275266.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Nin-like

Protein Properties

Length: 960aa MW: 106906 Da PI: 6.8722

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021275266.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.3	2.3e-26	824	873	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i ledl+kyF+lpi +A+++L+v+lTvLKr+CR++GI+RWPhRkiksl XP_021275266.1 824 ARIALEDLAKYFDLPIVEASRNLNVGLTVLKRKCREFGIPRWPHRKIKSL 873 689*********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 960 aa Download sequence
MLIGLFTRDG PSPLCKLCFP PLTNHERPPP YPPIDPTTFD LIVIGXGLPE SIAAAAASTA 60 SKSVLHLDPN PFYGSHFSSI PLTSLSSFLS FHSTSRSPSP SSNGHHDSTV LDFATRPLYS 120 SLDISNFSPQ LLDQHSRKFN IDVAGPRVLF CADKSIDLML KSGASQYMEF KSIDASFVGD 180 DKGNLWXVPD SRAAIFKDMS LGLMEKNQLM RFFKLVQGHL AGEEGLKISE EDLESPFVDF 240 LNKMGLPPKI KSFILYAIAM ADYDQEDVGV CQDLLKTKDG IDQLALYNAS VGRFSNALGA 300 LIYPVYGQGE LSQAFCRRAA VKGCLYVLRM PVTSLLVDKD SGCYKGVRLA SGQDIFSKKL 360 ILDPSFTVPL PLGSPSPHPL QEKLPLFSLR DDRGKVARGI CITKTSLKPD VSNFLVVYPP 420 RSLFPEQVTS IRLLQIGSNV AVCPPDMFVI YISALCSDDD EGKKLLHAVM NTLVTLPVST 480 NSESNAAVQS KTAESGGAAQ NETAESSFTV QNDLGEGKPT LLWSALYIQK LTLGQVDFIC 540 SGPMPDGKLN YNDLLDATVK LFQEIYPDEE FFPETSTSEI PEDDVQFLTC RATLQTCGQG 600 PRVVGEQSWF GAFLLTLMIS SSSSWSCLKT PSLTTLLVFE NTNNKELIRS LHVYRLENGE 660 ENEVEREFVF RKDGPYVEMA TSPLLRLQGL RLLEHFEGRV IGLWLCVFAF HAHRLPRFFF 720 IPSVLSISRN PKLKSIPTLA NDLQVIFQRG CGTQDRGPSR KSSKESCTRD ADNYCQSKRS 780 LLVLDQDLNC LPNSIATSEL LKSQHTEQGV AVKKKKRADS KDIARIALED LAKYFDLPIV 840 EASRNLNVGL TVLKRKCREF GIPRWPHRKI KSLDGLIRDL QEEAEQRQQE DEAAAFAVAK 900 RRMMLETEKE SIEREPFIEL KSETKRFRQD IFKRRHKARA LKNQCLXVLH NPVTELDGNT

Sequence ? help Back to Top

Protein Sequence Length: 960 aa Download sequence

MLIGLFTRDG PSPLCKLCFP PLTNHERPPP YPPIDPTTFD LIVIGXGLPE SIAAAAASTA  60
SKSVLHLDPN PFYGSHFSSI PLTSLSSFLS FHSTSRSPSP SSNGHHDSTV LDFATRPLYS  120
SLDISNFSPQ LLDQHSRKFN IDVAGPRVLF CADKSIDLML KSGASQYMEF KSIDASFVGD  180
DKGNLWXVPD SRAAIFKDMS LGLMEKNQLM RFFKLVQGHL AGEEGLKISE EDLESPFVDF  240
LNKMGLPPKI KSFILYAIAM ADYDQEDVGV CQDLLKTKDG IDQLALYNAS VGRFSNALGA  300
LIYPVYGQGE LSQAFCRRAA VKGCLYVLRM PVTSLLVDKD SGCYKGVRLA SGQDIFSKKL  360
ILDPSFTVPL PLGSPSPHPL QEKLPLFSLR DDRGKVARGI CITKTSLKPD VSNFLVVYPP  420
RSLFPEQVTS IRLLQIGSNV AVCPPDMFVI YISALCSDDD EGKKLLHAVM NTLVTLPVST  480
NSESNAAVQS KTAESGGAAQ NETAESSFTV QNDLGEGKPT LLWSALYIQK LTLGQVDFIC  540
SGPMPDGKLN YNDLLDATVK LFQEIYPDEE FFPETSTSEI PEDDVQFLTC RATLQTCGQG  600
PRVVGEQSWF GAFLLTLMIS SSSSWSCLKT PSLTTLLVFE NTNNKELIRS LHVYRLENGE  660
ENEVEREFVF RKDGPYVEMA TSPLLRLQGL RLLEHFEGRV IGLWLCVFAF HAHRLPRFFF  720
IPSVLSISRN PKLKSIPTLA NDLQVIFQRG CGTQDRGPSR KSSKESCTRD ADNYCQSKRS  780
LLVLDQDLNC LPNSIATSEL LKSQHTEQGV AVKKKKRADS KDIARIALED LAKYFDLPIV  840
EASRNLNVGL TVLKRKCREF GIPRWPHRKI KSLDGLIRDL QEEAEQRQQE DEAAAFAVAK  900
RRMMLETEKE SIEREPFIEL KSETKRFRQD IFKRRHKARA LKNQCLXVLH NPVTELDGNT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	4e-74	Nin-like family protein