PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021275222.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 515aa MW: 56196.7 Da PI: 7.9799

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021275222.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.3	4.3e-06	461	484	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C++f+ C+ G++C + H+ XP_021275222.1 461 QKPCMYFSTPKGCRNGSNCLYLHD 484 789********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MKRSRKSNRV SWAPGVNLCQ VKLFLTEDCP SKVGELQDTL QAKTSWTLQP SGMCANDLPP 60 GFEGGHYVNG LKYDLAEMPR IQWTCPPKFV LNCNWHVVAA EESEEVEAQT LREMRVLEAV 120 YPRLSAIPPS PSVSMDVEVE PYDDRRTPLV PLTPIEDEEG ADVSSDFAIQ PKTLSNSQTA 180 ALIMPQGLLG SGTHGMPNCP SSAVKSPALD MLPGARSDVV VAASAALSVI MKSKEQGNLI 240 DTELLVKILS DPKMVEKLIQ DHGNLPAAAN AVSTPLHTSE PETVITSLPR STPAIVPSPM 300 PADRNSNHFI KEFQPPLTMP APRADIVSVS MPKRVEPSVP SFADINMISG HRAANGNAYS 360 TLNKMQPALS MILVQPKTLP EVQPVISSTP MQLNAGLAVA AMAANPVKDA NYIKNLIREH 420 GREKQEPKVH NIPKTASHLN HTQNQNMVQN IKPVALKAKF QKPCMYFSTP KGCRNGSNCL 480 YLHDKSLQWQ TGRTLELEAP SAKKMKLGWE ITGRI

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MKRSRKSNRV SWAPGVNLCQ VKLFLTEDCP SKVGELQDTL QAKTSWTLQP SGMCANDLPP  60
GFEGGHYVNG LKYDLAEMPR IQWTCPPKFV LNCNWHVVAA EESEEVEAQT LREMRVLEAV  120
YPRLSAIPPS PSVSMDVEVE PYDDRRTPLV PLTPIEDEEG ADVSSDFAIQ PKTLSNSQTA  180
ALIMPQGLLG SGTHGMPNCP SSAVKSPALD MLPGARSDVV VAASAALSVI MKSKEQGNLI  240
DTELLVKILS DPKMVEKLIQ DHGNLPAAAN AVSTPLHTSE PETVITSLPR STPAIVPSPM  300
PADRNSNHFI KEFQPPLTMP APRADIVSVS MPKRVEPSVP SFADINMISG HRAANGNAYS  360
TLNKMQPALS MILVQPKTLP EVQPVISSTP MQLNAGLAVA AMAANPVKDA NYIKNLIREH  420
GREKQEPKVH NIPKTASHLN HTQNQNMVQN IKPVALKAKF QKPCMYFSTP KGCRNGSNCL  480
YLHDKSLQWQ TGRTLELEAP SAKKMKLGWE ITGRI