PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021275040.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family C2H2
Protein Properties Length: 351aa    MW: 39635.9 Da    PI: 6.815
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021275040.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.92.2e-07141162223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C++Cgk F+r  nL+ H+r H
  XP_021275040.1 141 FCEICGKGFKRDANLRMHMRAH 162
                     6*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    
MSNLGEPFRI SPEYPSGEGS SLPQQEPFGH ADPRVPLLNL STVKTRMDSL QHFLSQSVNT  60
NTLISKDQMD LVSSEIASAI HQIIVNGAAL LSCAQKGHYP NPTPIRNPTP EPKLEVDDYD  120
EGESEIIELD AVELLSEHLH FCEICGKGFK RDANLRMHMR AHGNQYKTPE ALAKKTGNKG  180
EVKNWGRKTR FSCPYDGCNR NKKHDKFRPL KSVICVRNHF KRSHCPKMYG CNKCHKKSFS  240
VFTDLKSHLK HCGGGEESKK WKCSCGNSFS RKDKLFGHVS LFEGHMPAVM EEEDRKLKGV  300
VAMKEDEEKE EELVEREGWL EDGFFDGLLD GFCSFEDYCL QDVLAPSLDG L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.22e-72C2H2 family protein