PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021274959.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 440aa    MW: 48521.1 Da    PI: 5.8303
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021274959.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS302.78.9e-93794373374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                      lLl+cAe+v+ ++le a+ lL ++s+    + +p +  a   t+   a +++   e+y+ l +++ + ++s++ ++al+ ++ +sP++kfsh t
  XP_021274959.1  79 GLLLQCAECVAMDNLEDATDLLPEISDALLLRLTPERVGAVLCTRTPVACVSS-FLETYSPLDTKSLTLTQSQKIFNALQSYNSISPLVKFSHXT 172
                     58*************************99888888666666666666666665.999***********9************************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                     aNqaI +a++ge+rvH+iD+di+qGlQWp L++ LasR+++  s+RiTgv       +e le+tg+r  +f + +g+pfef++l  k  +  +l+
  XP_021274959.1 173 ANQAIFQALDGEDRVHVIDLDIMQGLQWPGLFHILASRSKKXRSMRITGVRI----LSELLESTGRRXGRFRDFFGLPFEFHPLEGKIGNVTDLS 263
                     ****************************************************....89*************************9777777779** PP

            GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                     +L v++  a++V++++  h l+d ++s       +L+l+  l+Pk++++veq+++h  +sFl rf+eal+yysalfd+l  +l+ +s er++vE+
  XP_021274959.1 264 QLGVQSTKAVVVHWMH--HCLYDITGSDLG----TLRLLTLLKPKLITIVEQDLSH-XGSFLGRFVEALHYYSALFDALXDGLGVDSLERHMVEQ 351
                     **************99..777777777777....9*********************.889*********************************** PP

            GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +l+g ei+n+v  +g + +  + ++e+W e l+++ F+pv+l+ + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++SaW+
  XP_021274959.1 352 QLFGXEIRNIVGSSGPKXT-GEVKVERWGEELRRVXFRPVSLGGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 437
                     ****************955.5556**************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    
MLQSLVPQSP INSNPSSNPN SSMKSKRVER DVSAATGDDS AADDPSTKRP NFSSGDQTAA  60
XKQEETVIEG ELTGLRLLGL LLQCAECVAM DNLEDATDLL PEISDALLLR LTPERVGAVL  120
CTRTPVACVS SFLETYSPLD TKSLTLTQSQ KIFNALQSYN SISPLVKFSH XTANQAIFQA  180
LDGEDRVHVI DLDIMQGLQW PGLFHILASR SKKXRSMRIT GVRILSELLE STGRRXGRFR  240
DFFGLPFEFH PLEGKIGNVT DLSQLGVQST KAVVVHWMHH CLYDITGSDL GTLRLLTLLK  300
PKLITIVEQD LSHXGSFLGR FVEALHYYSA LFDALXDGLG VDSLERHMVE QQLFGXEIRN  360
IVGSSGPKXT GEVKVERWGE ELRRVXFRPV SLGGNPAAQA SLLLGMFPWK GYTLVEENGC  420
LKLGWKDLSL LTASAWQPSE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-146GRAS family protein