PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021274635.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 608aa    MW: 67498.4 Da    PI: 4.9131
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021274635.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS371.31.3e-1132416082374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      ++Ll+cA+  ++++ e a + L rl+e +s+ g p++R+a+yfteAL++r++r   +  k l+  +t+   s+e + ++k++++++P+ kf+hl
  XP_021274635.1 241 LKALLDCARL-AESEPEXAIKSLIRLRESVSECGXPTERVAFYFTEALHSRVSR---QAEKRLTILDTT---SEEFTLSYKALNDACPYSKFAHL 328
                     689******5.55688999999********************************...777778888887...89999****************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     taNqaIlea+e+++++Hi+Df+i qG+QW+aLlqaLa+R++g+p ++Ri g+ +p  g   + +l +tg+rL++fA+ l+++fef++ + + +e+
  XP_021274635.1 329 TANQAILEATERASKIHIVDFGIVQGVQWAALLQALATRSAGKPtQIRISGIPAPVLGksPASSLYATGNRLRDFAKLLDLNFEFEP-ILTPIEE 422
                     ****************************************77666*********998888999************************.799**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     l+  ++rv+++E laVn++lql++llde   + +   + L l ksl+Pk+v++ e ea++n+  F +rf +al+yysa+f+sle +lpr+s eri
  XP_021274635.1 423 LNELSFRVDQDEILAVNFMLQLYNLLDEAPVTVE---TALLLAKSLNPKIVTLGEYEASLNRVGFENRFKNALRYYSAVFESLEPNLPRDSPERI 514
                     **************************88877777...899******************************************************* PP

            GRAS 284 kvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                      vEr llgr+i  v+  e+ e rrer+e +e+W++ +e+aGF++v+ls++a +qa+ ll +++ s  y++ e++  ++ l Wk+ pL++vS+Wr
  XP_021274635.1 515 QVERLLLGRRIAGVIGPEEVEkRRERMEDKEQWKNLIESAGFETVALSHYAKSQARILLWNYNySSSYSLIESQPGFLsLAWKEVPLLTVSSWR 608
                     ****************999887*****************************************9999**9999988888**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    
MAYMCADSGN LMAIAQQVIK QKQQQEQQQQ QHHHQQQQLL GLNPFSINPW PNTHHAVSNA  60
PNLGYGLSGP GFADPFQGDT GEGFQFPNIE HQPVGFXVPD FCGGAGGEFD SDEWMDSLMN  120
SGYQRIXLNL PSGCEAWQNX GDFGLYGADP FSACXNRLSV TCSPPSDLNR VIFSTEVQKN  180
PNTLQAQPQL PTWAPSPPPP PPQVTVKETK TSTPPSQTPS INDVVGVSST SPEAESAXPL  240
LKALLDCARL AESEPEXAIK SLIRLRESVS ECGXPTERVA FYFTEALHSR VSRQAEKRLT  300
ILDTTSEEFT LSYKALNDAC PYSKFAHLTA NQAILEATER ASKIHIVDFG IVQGVQWAAL  360
LQALATRSAG KPTQIRISGI PAPVLGKSPA SSLYATGNRL RDFAKLLDLN FEFEPILTPI  420
EELNELSFRV DQDEILAVNF MLQLYNLLDE APVTVETALL LAKSLNPKIV TLGEYEASLN  480
RVGFENRFKN ALRYYSAVFE SLEPNLPRDS PERIQVERLL LGRRIAGVIG PEEVEKRRER  540
MEDKEQWKNL IESAGFETVA LSHYAKSQAR ILLWNYNYSS SYSLIESQPG FLSLAWKEVP  600
LLTVSSWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein