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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021274421.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | GRAS | ||||||||
Protein Properties | Length: 405aa MW: 45212.8 Da PI: 5.0227 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 311.6 | 1.8e-95 | 2 | 402 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.....fsevsPil 91 ++lL++cA+a++s+d++laq++L+ l+++a pdgd++qRl+ f++AL r a+ ++++k l++ ++++ n s ++a+++ f++++P++ XP_021274421.1 2 EQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTCAFLRALIVRAAK--NGTCKMLAAMANAHCNLSIDIHAFSVielasFVDLTPWH 94 79****************************************************..9999999999999999888888887777799******** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvl. 181 +f++ +aN aIleaveg + +Hi+D+++++++Q p+L++a+a+R egpp l++T+ g ++++ ++ee+g++L +fA++ +v +ef+v+ XP_021274421.1 95 RFGFTAANAAILEAVEGYSVIHIVDLSLTHCMQIPTLIDAIANRLEGPPLLKLTVAGGATEDippmLDLSYEELGSKLVNFARSRNVMLEFRVVp 189 **********************************************************9999998888899**********************99 PP GRAS 182 ..vakrledleleeLrvkp......gEalaVnlvlqlhrll................desvsleserdevLklvkslsPkvvvvveqeadhnses 252 +a+ +++l +e+Lrv++ gEal++n++++lh+++ e+ s++s r+ +Lk++++l P++vv+v+++ad++s++ XP_021274421.1 190 stYADGFSSL-IEQLRVQHlvyaesGEALVINCHMMLHYIPeetlsplpnansnpysFEPSSTSSLRTMFLKALRGLDPTIVVLVDEDADLTSNN 283 9844455554.55555555555559*******************************988888888999*************************** PP GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347 ++ r+ +a++y + +d++++ lp+ s++r+++E+ + ++i+nv+a+eg +r+er e +++W +r+++a F+ +++e+a++++k++l +++ XP_021274421.1 284 LVCRLRSAFNYLWIPYDTVDTFLPQGSKQRQWYEAD-ICWKIENVIAHEGLQRVERLEPKSRWVQRMRNANFRGFSFGEDAVSEVKTMLDEHA-A 376 ************************************.********************************************************.8 PP GRAS 348 gyrveeesgslvlgWkdrpLvsvSaW 373 g+ +++e++ lvl+Wk++++v+++aW XP_021274421.1 377 GWGLKKEEDDLVLTWKGHNVVFATAW 402 999*********************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence |
MEQLLVHCAN AIESNDATLA QQILWVLNNI APPDGDSNQR LTCAFLRALI VRAAKNGTCK 60 MLAAMANAHC NLSIDIHAFS VIELASFVDL TPWHRFGFTA ANAAILEAVE GYSVIHIVDL 120 SLTHCMQIPT LIDAIANRLE GPPLLKLTVA GGATEDIPPM LDLSYEELGS KLVNFARSRN 180 VMLEFRVVPS TYADGFSSLI EQLRVQHLVY AESGEALVIN CHMMLHYIPE ETLSPLPNAN 240 SNPYSFEPSS TSSLRTMFLK ALRGLDPTIV VLVDEDADLT SNNLVCRLRS AFNYLWIPYD 300 TVDTFLPQGS KQRQWYEADI CWKIENVIAH EGLQRVERLE PKSRWVQRMR NANFRGFSFG 360 EDAVSEVKTM LDEHAAGWGL KKEEDDLVLT WKGHNVVFAT AWVPA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49950.1 | 0.0 | GRAS family protein |