PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021274420.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 405aa    MW: 45212.8 Da    PI: 5.0227
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021274420.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS311.61.8e-9524022373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.....fsevsPil 91 
                     ++lL++cA+a++s+d++laq++L+ l+++a pdgd++qRl+  f++AL  r a+  ++++k l++ ++++ n s  ++a+++     f++++P++
  XP_021274420.1   2 EQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTCAFLRALIVRAAK--NGTCKMLAAMANAHCNLSIDIHAFSVielasFVDLTPWH 94 
                     79****************************************************..9999999999999999888888887777799******** PP

            GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvl. 181
                     +f++ +aN aIleaveg + +Hi+D+++++++Q p+L++a+a+R egpp l++T+ g ++++       ++ee+g++L +fA++ +v +ef+v+ 
  XP_021274420.1  95 RFGFTAANAAILEAVEGYSVIHIVDLSLTHCMQIPTLIDAIANRLEGPPLLKLTVAGGATEDippmLDLSYEELGSKLVNFARSRNVMLEFRVVp 189
                     **********************************************************9999998888899**********************99 PP

            GRAS 182 ..vakrledleleeLrvkp......gEalaVnlvlqlhrll................desvsleserdevLklvkslsPkvvvvveqeadhnses 252
                       +a+ +++l +e+Lrv++      gEal++n++++lh+++                 e+ s++s r+ +Lk++++l P++vv+v+++ad++s++
  XP_021274420.1 190 stYADGFSSL-IEQLRVQHlvyaesGEALVINCHMMLHYIPeetlsplpnansnpysFEPSSTSSLRTMFLKALRGLDPTIVVLVDEDADLTSNN 283
                     9844455554.55555555555559*******************************988888888999*************************** PP

            GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347
                     ++ r+ +a++y +  +d++++ lp+ s++r+++E+  + ++i+nv+a+eg +r+er e +++W +r+++a F+  +++e+a++++k++l +++  
  XP_021274420.1 284 LVCRLRSAFNYLWIPYDTVDTFLPQGSKQRQWYEAD-ICWKIENVIAHEGLQRVERLEPKSRWVQRMRNANFRGFSFGEDAVSEVKTMLDEHA-A 376
                     ************************************.********************************************************.8 PP

            GRAS 348 gyrveeesgslvlgWkdrpLvsvSaW 373
                     g+ +++e++ lvl+Wk++++v+++aW
  XP_021274420.1 377 GWGLKKEEDDLVLTWKGHNVVFATAW 402
                     999*********************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    
MEQLLVHCAN AIESNDATLA QQILWVLNNI APPDGDSNQR LTCAFLRALI VRAAKNGTCK  60
MLAAMANAHC NLSIDIHAFS VIELASFVDL TPWHRFGFTA ANAAILEAVE GYSVIHIVDL  120
SLTHCMQIPT LIDAIANRLE GPPLLKLTVA GGATEDIPPM LDLSYEELGS KLVNFARSRN  180
VMLEFRVVPS TYADGFSSLI EQLRVQHLVY AESGEALVIN CHMMLHYIPE ETLSPLPNAN  240
SNPYSFEPSS TSSLRTMFLK ALRGLDPTIV VLVDEDADLT SNNLVCRLRS AFNYLWIPYD  300
TVDTFLPQGS KQRQWYEADI CWKIENVIAH EGLQRVERLE PKSRWVQRMR NANFRGFSFG  360
EDAVSEVKTM LDEHAAGWGL KKEEDDLVLT WKGHNVVFAT AWVPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein