PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021274419.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 429aa    MW: 47886.7 Da    PI: 5.412
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021274419.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS79.75.2e-25531622108
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.....fsevsPil 91 
                     ++lL++cA+a++s+d++laq++L+ l+++a pdgd++qRl+  f++AL  r a+  ++++k l++ ++++ n s  ++a+++     f++++P++
  XP_021274419.1  53 EQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTCAFLRALIVRAAK--NGTCKMLAAMANAHCNLSIDIHAFSVielasFVDLTPWH 145
                     79****************************************************..9999999999999999888888887777799******** PP

            GRAS  92 kfshltaNqaIleaveg 108
                     +f++ +aN aIleaveg
  XP_021274419.1 146 RFGFTAANAAILEAVEG 162
                     ***************98 PP
2GRAS167.79.1e-52164426137373
            GRAS 137 egppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvl...vakrledleleeLrvkp......gEalaVnlvlqlhrll.... 214
                     egpp l++T+ g ++++       ++ee+g++L +fA++ +v +ef+v+   +a+ +++l +e+Lrv++      gEal++n++++lh+++    
  XP_021274419.1 164 EGPPLLKLTVAGGATEDippmLDLSYEELGSKLVNFARSRNVMLEFRVVpstYADGFSSL-IEQLRVQHlvyaesGEALVINCHMMLHYIPeetl 257
                     69***********9999998888899**********************999844455554.55555555555559******************** PP

            GRAS 215 ............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                                  e+ s++s r+ +Lk++++l P++vv+v+++ad++s++++ r+ +a++y +  +d++++ lp+ s++r+++E+  + ++i+nv
  XP_021274419.1 258 splpnansnpysFEPSSTSSLRTMFLKALRGLDPTIVVLVDEDADLTSNNLVCRLRSAFNYLWIPYDTVDTFLPQGSKQRQWYEAD-ICWKIENV 351
                     ***********988888888999***************************************************************.******** PP

            GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +a+eg +r+er e +++W +r+++a F+  +++e+a++++k++l +++  g+ +++e++ lvl+Wk++++v+++aW
  XP_021274419.1 352 IAHEGLQRVERLEPKSRWVQRMRNANFRGFSFGEDAVSEVKTMLDEHA-AGWGLKKEEDDLVLTWKGHNVVFATAW 426
                     ************************************************.8999*********************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    
MMQFTETPPQ PLHQITPFSI PTMNKNQIHR ARPWPGFPTS KGLGSFGDAN CMEQLLVHCA  60
NAIESNDATL AQQILWVLNN IAPPDGDSNQ RLTCAFLRAL IVRAAKNGTC KMLAAMANAH  120
CNLSIDIHAF SVIELASFVD LTPWHRFGFT AANAAILEAV EGLEGPPLLK LTVAGGATED  180
IPPMLDLSYE ELGSKLVNFA RSRNVMLEFR VVPSTYADGF SSLIEQLRVQ HLVYAESGEA  240
LVINCHMMLH YIPEETLSPL PNANSNPYSF EPSSTSSLRT MFLKALRGLD PTIVVLVDED  300
ADLTSNNLVC RLRSAFNYLW IPYDTVDTFL PQGSKQRQWY EADICWKIEN VIAHEGLQRV  360
ERLEPKSRWV QRMRNANFRG FSFGEDAVSE VKTMLDEHAA GWGLKKEEDD LVLTWKGHNV  420
VFATAWVPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-165GRAS family protein