PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021274418.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 456aa    MW: 50906.3 Da    PI: 5.5545
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021274418.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS310.92.8e-95534532373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.....fsevsPil 91 
                     ++lL++cA+a++s+d++laq++L+ l+++a pdgd++qRl+  f++AL  r a+  ++++k l++ ++++ n s  ++a+++     f++++P++
  XP_021274418.1  53 EQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTCAFLRALIVRAAK--NGTCKMLAAMANAHCNLSIDIHAFSVielasFVDLTPWH 145
                     79****************************************************..9999999999999999888888887777799******** PP

            GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvl. 181
                     +f++ +aN aIleaveg + +Hi+D+++++++Q p+L++a+a+R egpp l++T+ g ++++       ++ee+g++L +fA++ +v +ef+v+ 
  XP_021274418.1 146 RFGFTAANAAILEAVEGYSVIHIVDLSLTHCMQIPTLIDAIANRLEGPPLLKLTVAGGATEDippmLDLSYEELGSKLVNFARSRNVMLEFRVVp 240
                     **********************************************************9999998888899**********************99 PP

            GRAS 182 ..vakrledleleeLrvkp......gEalaVnlvlqlhrll................desvsleserdevLklvkslsPkvvvvveqeadhnses 252
                       +a+ +++l +e+Lrv++      gEal++n++++lh+++                 e+ s++s r+ +Lk++++l P++vv+v+++ad++s++
  XP_021274418.1 241 stYADGFSSL-IEQLRVQHlvyaesGEALVINCHMMLHYIPeetlsplpnansnpysFEPSSTSSLRTMFLKALRGLDPTIVVLVDEDADLTSNN 334
                     9844455554.55555555555559*******************************988888888999*************************** PP

            GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347
                     ++ r+ +a++y +  +d++++ lp+ s++r+++E+  + ++i+nv+a+eg +r+er e +++W +r+++a F+  +++e+a++++k++l +++  
  XP_021274418.1 335 LVCRLRSAFNYLWIPYDTVDTFLPQGSKQRQWYEAD-ICWKIENVIAHEGLQRVERLEPKSRWVQRMRNANFRGFSFGEDAVSEVKTMLDEHA-A 427
                     ************************************.********************************************************.8 PP

            GRAS 348 gyrveeesgslvlgWkdrpLvsvSaW 373
                     g+ +++e++ lvl+Wk++++v+++aW
  XP_021274418.1 428 GWGLKKEEDDLVLTWKGHNVVFATAW 453
                     999*********************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    
MMQFTETPPQ PLHQITPFSI PTMNKNQIHR ARPWPGFPTS KGLGSFGDAN CMEQLLVHCA  60
NAIESNDATL AQQILWVLNN IAPPDGDSNQ RLTCAFLRAL IVRAAKNGTC KMLAAMANAH  120
CNLSIDIHAF SVIELASFVD LTPWHRFGFT AANAAILEAV EGYSVIHIVD LSLTHCMQIP  180
TLIDAIANRL EGPPLLKLTV AGGATEDIPP MLDLSYEELG SKLVNFARSR NVMLEFRVVP  240
STYADGFSSL IEQLRVQHLV YAESGEALVI NCHMMLHYIP EETLSPLPNA NSNPYSFEPS  300
STSSLRTMFL KALRGLDPTI VVLVDEDADL TSNNLVCRLR SAFNYLWIPY DTVDTFLPQG  360
SKQRQWYEAD ICWKIENVIA HEGLQRVERL EPKSRWVQRM RNANFRGFSF GEDAVSEVKT  420
MLDEHAAGWG LKKEEDDLVL TWKGHNVVFA TAWVPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein