PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021274415.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 334aa    MW: 38033.8 Da    PI: 4.8387
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021274415.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.2e-12167210654
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  XP_021274415.1 167 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 210
                     589*********************66......****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MELSQHGFLE ELLAPRRDSW TTFSTGVTEF LPNGWNFDSF DENPTLATSN LSFVGFSHPT  60
ENPSFECPFG EHQPYPFADG FTAPEMDSSY TKNDTSPFPA QEDYPSMVDD EEFGLLSSDH  120
QHSLEERKSS CKVEMEQTSN IQSFNMGLFG EKKTKTKRLE GQPSKNLMAE RRRRKRLNDR  180
LSMLRSIVPK ISKMDRTSIL GDTIDYMKEL LERINKLQEE ETKVGRDQVS LMSNLKELKP  240
NEVMVRNSPK FDVERRENNT RIDICCATKP GLLLSTVNTL EALGLEIQQC VISCFNDFSM  300
QASCSEVAEQ RPLISSEDIK QALFRNAGYG GRCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170177ERRRRKRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.16e-94bHLH family protein