PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021274357.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | C3H | ||||||||
Protein Properties | Length: 437aa MW: 47473.9 Da PI: 8.3548 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35 | 2.3e-11 | 47 | 72 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++++rtG C yG +C+F+H+ XP_021274357.1 47 PGEPDCSYYLRTGLCGYGTNCRFNHP 72 5789*********************9 PP | |||||||
2 | zf-CCCH | 31.6 | 2.9e-10 | 91 | 115 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG +Ck++H++ XP_021274357.1 91 QPDCGYFLKTGTCKYGRTCKYHHPK 115 789********************96 PP | |||||||
3 | zf-CCCH | 40.9 | 3.3e-13 | 135 | 160 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++rtG Ck+G CkF+H++ XP_021274357.1 135 DEKPCPYYMRTGSCKFGVACKFHHPQ 160 5789********************97 PP | |||||||
4 | zf-CCCH | 39.6 | 9e-13 | 280 | 305 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+++ tGtCkyG+ Ck++H++ XP_021274357.1 280 DQPECRYYMNTGTCKYGSDCKYHHPK 305 689*********************96 PP | |||||||
5 | zf-CCCH | 28.8 | 2.1e-09 | 326 | 350 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ + +G CkyG++C+F H+ XP_021274357.1 326 GQAVCSSYTMYGLCKYGPTCRFDHP 350 7899********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence |
MPDNRQVQNN AVSNQSADNI EAILRLKIND NNQEVGVSKS TAYPDRPGEP DCSYYLRTGL 60 CGYGTNCRFN HPTYAAQGGQ YREELPERIG QPDCGYFLKT GTCKYGRTCK YHHPKDRNGA 120 GPVTFNIVGL PMRQDEKPCP YYMRTGSCKF GVACKFHHPQ PPSAGAGLPG NGPVSSSILP 180 PSGVSYAGGL PTWSLPRAPY VSGPRLQGPQ SYMPVVVSPS QSIIPAHGWS TYMGNMSSVS 240 STGILGSNFA YNSMNPAESG SSGQVFLSST SASNFPERPD QPECRYYMNT GTCKYGSDCK 300 YHHPKERIAN SAVNNIGPLG LPSRPGQAVC SSYTMYGLCK YGPTCRFDHP YLGYPYNYGL 360 SLPLSVFDTS LLTYQRISPT AHSSEAPLSS KLPDWARNTD SVSKKHQNLE TKNSDDPPEQ 420 AASPPHSLQS SSKASHD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-138 | C3H family protein |