PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021274356.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | C3H | ||||||||
Protein Properties | Length: 438aa MW: 47603 Da PI: 8.2579 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35 | 2.4e-11 | 48 | 73 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++++rtG C yG +C+F+H+ XP_021274356.1 48 PGEPDCSYYLRTGLCGYGTNCRFNHP 73 5789*********************9 PP | |||||||
2 | zf-CCCH | 31.6 | 2.9e-10 | 92 | 116 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG +Ck++H++ XP_021274356.1 92 QPDCGYFLKTGTCKYGRTCKYHHPK 116 789********************96 PP | |||||||
3 | zf-CCCH | 40.9 | 3.3e-13 | 136 | 161 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++rtG Ck+G CkF+H++ XP_021274356.1 136 DEKPCPYYMRTGSCKFGVACKFHHPQ 161 5789********************97 PP | |||||||
4 | zf-CCCH | 39.5 | 9e-13 | 281 | 306 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+++ tGtCkyG+ Ck++H++ XP_021274356.1 281 DQPECRYYMNTGTCKYGSDCKYHHPK 306 689*********************96 PP | |||||||
5 | zf-CCCH | 28.8 | 2.1e-09 | 327 | 351 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ + +G CkyG++C+F H+ XP_021274356.1 327 GQAVCSSYTMYGLCKYGPTCRFDHP 351 7899********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence |
MPDNRQVQNN AVSNQSADNI EEAILRLKIN DNNQEVGVSK STAYPDRPGE PDCSYYLRTG 60 LCGYGTNCRF NHPTYAAQGG QYREELPERI GQPDCGYFLK TGTCKYGRTC KYHHPKDRNG 120 AGPVTFNIVG LPMRQDEKPC PYYMRTGSCK FGVACKFHHP QPPSAGAGLP GNGPVSSSIL 180 PPSGVSYAGG LPTWSLPRAP YVSGPRLQGP QSYMPVVVSP SQSIIPAHGW STYMGNMSSV 240 SSTGILGSNF AYNSMNPAES GSSGQVFLSS TSASNFPERP DQPECRYYMN TGTCKYGSDC 300 KYHHPKERIA NSAVNNIGPL GLPSRPGQAV CSSYTMYGLC KYGPTCRFDH PYLGYPYNYG 360 LSLPLSVFDT SLLTYQRISP TAHSSEAPLS SKLPDWARNT DSVSKKHQNL ETKNSDDPPE 420 QAASPPHSLQ SSSKASHD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-140 | C3H family protein |