PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021274225.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

SBP

Protein Properties

Length: 196aa MW: 22544.3 Da PI: 9.258

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021274225.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	124.2	5.5e-39	72	149	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+++C++dl +ak+yhrrhkvCe h+ka+ v v+g++qrfCqqCsrfhe+sefD +krsCr+rLa+hnerrrk q+ XP_021274225.1 72 CCQADECDTDLRDAKQYHRRHKVCERHAKAAFVSVKGIRQRFCQQCSRFHEISEFDGTKRSCRDRLAGHNERRRKVQS 149 6**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence
MAKGSFKTLG GIEDESGTEQ ESEAESEDEE KQEQGEERRV MIRVVPRERF ERRSLLQSHS 60 ASCRGGGGGL LCCQADECDT DLRDAKQYHR RHKVCERHAK AAFVSVKGIR QRFCQQCSRF 120 HEISEFDGTK RSCRDRLAGH NERRRKVQSD QQAEDVERSP ASEMNRSMVK MKAARHPKHG 180 KLTLQGCPNP KRFRIR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	172	RRRKVQSDQQAEDVERSPASEMNRSMVKMK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15270.1	1e-34	SBP family protein