PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021274189.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 362aa MW: 40398.5 Da PI: 7.1817

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021274189.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.8	1.7e-12	185	231	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L ++P + kK++Ka++L A++Y+k+Lq XP_021274189.1 185 DHIMAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYVKQLQ 231 699**********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MDSSSAKWLS ELGMDEYNII HQCHMNSLAE LTTAEDIATA LTGGNFKKSF SSESYSSYPN 60 FNTKNATTFS GSSIETCERP TKQIKTSTSW NSSTTTEHVP PKPSSPTSQI LSFEKSTSLP 120 ANSQQFYNID HRSMKPKDEM VSSGNMNFSP VITNGPYENT NYAPKTNPGI NRTYSMTRSP 180 SHAQDHIMAE RKRREKLSQR FIALSAIVPG LKKMDKASVL GDAIKYVKQL QERLKVLEEQ 240 TKKRTVESVV FVRKSQLSAD DETSSCEENS DSQSSDAALP EIEARVSDND VLIRIHCEKQ 300 KGFVVKILSE IENLPLTVVN SSVLPFGNST LDMTIIAQKD AEFNMTVKDL VKDLRVSFLK 360 FM

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MDSSSAKWLS ELGMDEYNII HQCHMNSLAE LTTAEDIATA LTGGNFKKSF SSESYSSYPN  60
FNTKNATTFS GSSIETCERP TKQIKTSTSW NSSTTTEHVP PKPSSPTSQI LSFEKSTSLP  120
ANSQQFYNID HRSMKPKDEM VSSGNMNFSP VITNGPYENT NYAPKTNPGI NRTYSMTRSP  180
SHAQDHIMAE RKRREKLSQR FIALSAIVPG LKKMDKASVL GDAIKYVKQL QERLKVLEEQ  240
TKKRTVESVV FVRKSQLSAD DETSSCEENS DSQSSDAALP EIEARVSDND VLIRIHCEKQ  300
KGFVVKILSE IENLPLTVVN SSVLPFGNST LDMTIIAQKD AEFNMTVKDL VKDLRVSFLK  360
FM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	195	ERKRRE
2	191	196	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	2e-71	bHLH family protein