PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021273854.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MYB_related
Protein Properties Length: 293aa    MW: 31858.7 Da    PI: 10.4273
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021273854.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.5e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G+g W+ I +          R+  ++k++w++
   XP_021273854.1  5 KQKWTAEEEAALKAGVLKHGTGKWRNILSDPEfssvlRSRSNVDLKDKWRN 55
                     79************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MGAPKQKWTA EEEAALKAGV LKHGTGKWRN ILSDPEFSSV LRSRSNVDLK DKWRNINATA  60
IWGSRQKAKL ALKRNQLNAK HDDNHAAVIT VPPSEEVVDA KSLAISSGTP RATGLKKPMS  120
RLDNILLEAI TSLKEPGGSD RASIAVYIEE KYAAPPNLKK LLATKLKLLV ANGTLIKIKH  180
KYRIAPRSTV SEARRSPLLL LEGRQKDSSK WDKKGINILT KSQVDAELSK MRSMTAEEAA  240
AAAARAVAEA EVAIAEAEEA AREAEAAEAE AEAAKIFAKA AEKALKARML DTW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.14e-77MYB_related family protein