PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021273679.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 538aa MW: 55802.8 Da PI: 8.5455

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021273679.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_021273679.1 61 FVCEICNKGFQRDQNLQLHRRGH 83 89*******************88 PP
2	zf-C2H2	11.1	0.0012	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + XP_021273679.1 137 WKCDKCSKKYAVQSDWKAHSKIC 159 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence
MPVDLDNXST ASGEASVSSS GNQNPPPNXT AKKKRNLPGM PDPDAEVIAL SPKTLLATNR 60 FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKR VYVCPEPSCV HHDPSRALGD 120 LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT LFSRRDSFIT 180 HRAFCDALAE ESARAQTHPQ PQNQNQAVAN PSSESDPKVQ AVDSSAPPAP APTPXSGTAS 240 APVQVSASAP APTPAPPALP QSTSVISSSV LPIRSSELPE NPTPIVEDAP VPAPAPAGLN 300 GSCSTSTSSG SNGGSRSSVF ASLFASSTAS ASLQPPQPPA FTDLIRAMGR PDRPADLAPS 360 TSTEPISLCL STNHGSSIFG TAGQERRQYA PPPQPAMSAT ALLQKAAQMG AAATNASLLR 420 GFGIVSSSSS SEQQDSLQWG QRQVEPENAS VPAGLGLGLP CDGSSGLKEL MMGTPVFGPK 480 QTTLDFLGLG MAAGGNPSGG LSALITSIGG GLDVAAAAAA AASFGGGDFT GKDIGRSA

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence

MPVDLDNXST ASGEASVSSS GNQNPPPNXT AKKKRNLPGM PDPDAEVIAL SPKTLLATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKR VYVCPEPSCV HHDPSRALGD  120
LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT LFSRRDSFIT  180
HRAFCDALAE ESARAQTHPQ PQNQNQAVAN PSSESDPKVQ AVDSSAPPAP APTPXSGTAS  240
APVQVSASAP APTPAPPALP QSTSVISSSV LPIRSSELPE NPTPIVEDAP VPAPAPAGLN  300
GSCSTSTSSG SNGGSRSSVF ASLFASSTAS ASLQPPQPPA FTDLIRAMGR PDRPADLAPS  360
TSTEPISLCL STNHGSSIFG TAGQERRQYA PPPQPAMSAT ALLQKAAQMG AAATNASLLR  420
GFGIVSSSSS SEQQDSLQWG QRQVEPENAS VPAGLGLGLP CDGSSGLKEL MMGTPVFGPK  480
QTTLDFLGLG MAAGGNPSGG LSALITSIGG GLDVAAAAAA AASFGGGDFT GKDIGRSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-108	C2H2 family protein