PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021273672.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

WRKY

Protein Properties

Length: 505aa MW: 55257.2 Da PI: 7.6213

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021273672.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.5	8.9e-31	106	163	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK vkg+ef rsYY+Ct+++C vkk++ers+ d+k+v+++Y g+H+h+k XP_021273672.1 106 EDGYNWRKYGQKLVKGNEFVRSYYKCTHPNCLVKKQLERSH-DGKMVDTVYFGRHDHPK 163 7**************************************.*************85 PP
2	WRKY	104.1	7.6e-33	280	338	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK vkg+++prsYYrC+ +gCpvkk+ver+++d k+v++tYeg+H+h+ XP_021273672.1 280 VNDGYRWRKYGQKLVKGNPNPRSYYRCSNPGCPVKKHVERASHDVKLVITTYEGRHDHD 338 58********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence
MVSSGKCITD EVGRDKLQSP DAGNHGLQQI SDSKVHLPQS NQGGGTPSIK SEKAPLTDSG 60 VQTSKSERGN VSSMISNKTS VTPDMTPSPL PGTEGSTPII REKASEDGYN WRKYGQKLVK 120 GNEFVRSYYK CTHPNCLVKK QLERSHDGKM VDTVYFGRHD HPKPLNLPLA VGVVVSVVEE 180 KTYNASPTVV KDKSSDARSQ TPRQIEPQDD FQPLAIAAGE NVKGAPSKSI RIQNVADSDD 240 DHVISKRRKK ENSNADASPV EKQTTESRMV VKTLSEVDIV NDGYRWRKYG QKLVKGNPNP 300 RSYYRCSNPG CPVKKHVERA SHDVKLVITT YEGRHDHDIP PTRNVTHNTT GVNVHSAAHN 360 DESGTKVXES EPACVDMVVH FSSGLENKSS EQLNGESTPK SEVSGAVCVD VVDAPISGPE 420 SGSNEQRRGK VQPSKESKGD GNDMIVRNKS ISQNTSKEQL SNKLETKSEN DTVCIDKMVH 480 ITPHPECNFD EQRMPSAEPV KAELG

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence

MVSSGKCITD EVGRDKLQSP DAGNHGLQQI SDSKVHLPQS NQGGGTPSIK SEKAPLTDSG  60
VQTSKSERGN VSSMISNKTS VTPDMTPSPL PGTEGSTPII REKASEDGYN WRKYGQKLVK  120
GNEFVRSYYK CTHPNCLVKK QLERSHDGKM VDTVYFGRHD HPKPLNLPLA VGVVVSVVEE  180
KTYNASPTVV KDKSSDARSQ TPRQIEPQDD FQPLAIAAGE NVKGAPSKSI RIQNVADSDD  240
DHVISKRRKK ENSNADASPV EKQTTESRMV VKTLSEVDIV NDGYRWRKYG QKLVKGNPNP  300
RSYYRCSNPG CPVKKHVERA SHDVKLVITT YEGRHDHDIP PTRNVTHNTT GVNVHSAAHN  360
DESGTKVXES EPACVDMVVH FSSGLENKSS EQLNGESTPK SEVSGAVCVD VVDAPISGPE  420
SGSNEQRRGK VQPSKESKGD GNDMIVRNKS ISQNTSKEQL SNKLETKSEN DTVCIDKMVH  480
ITPHPECNFD EQRMPSAEPV KAELG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G04880.2	1e-101	WRKY family protein