PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021273623.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family WRKY
Protein Properties Length: 316aa    MW: 35048.5 Da    PI: 7.6774
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021273623.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.99.9e-34177234259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s++prsYYrCts++C+vkk+vers +dp+vv++tYeg+Hnh+
  XP_021273623.1 177 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSFQDPSVVITTYEGQHNHH 234
                     8********************************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MSSNEKKDLH HYDPFQGFNR STFPFFDDNP SMYNQAAAAV TVPTQNFQGF DPSYMSFTDC  60
LHGSLDYNSF SRAFDMSCSS SDVVSPIDDS NSKKIGTADN SVGNITENPS TPNSSVSSSS  120
NEGAPDEDSS KSKKDKQPKG AEDGDDKSKK VNKPKKEKRQ REPRFAFLTK SEIDHLEDGY  180
RWRKYGQKAV KNSPYPRSYY RCTSQKCTVK KRVERSFQDP SVVITTYEGQ HNHHIPATLR  240
GNAAGVLSPS ILASSASMGP SFPHEFLSHL LPSTSNPAGD TNSLHYQGLP PHQQQLQVPD  300
YGLLQDLVSS FTRQAP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161KEKRQR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.15e-52WRKY family protein