PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN27172.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C3H

Protein Properties

Length: 730aa MW: 78700.1 Da PI: 6.3966

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN27172.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.4e-07	309	329	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg PIN27172.1 309 PCPDFRK-GACRRGDMCEYAHG 329 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence
MCSGPEQSNS NSSTIQAADV IQSKNMKDMS KLSVETEDSF SSLLEYAANN DVEAFKRSIE 60 LDLSAVDEAG LWYVRKKGSK QITQEERTPL MVAATYGSVD VLKLIVALPE VDLNRLCGQD 120 KWTALHCAAS GGSVNVLDVA KLLLSAGADP NIEDAFGRRP VDVIVLPPKL PGAKAALEDL 180 LMSNTSDGSV GYSNLQVSIT TSNASSPVLS SSPRSSSPSS PADSSSPRAP KFSDVPANSV 240 SEKKQYPVDP SLPDIRNSIY STDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP 300 RKYHYSCVPC PDFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTS CARQVCFFAH 360 TQEELRPLYV STGSGVPSPR SAASGAGFMD MAAALNLVPG SPTSHSVMSP SAFNQTLSPT 420 ANGMPHSSAA WPPPNVPTLH LPGSNLQSSR LRSSLSARDL PPEDLNMLQD FDAQQLVLND 480 LACFSQSRPS SAMLNRSGRS KPTLTPSNLE ELFSSEISSS PRFSDQAVAS GVFSPTHKSA 540 VLNQFQQQQS MLSPVNTNVF SPRNIEHPLL QGPFGVSSPR MSPRSLETAT PMSARLSALA 600 QREKQPQQMP SLSSRDLVAN RAPTNGPPVT AWAKWGSPNG KADWSVNGDD LGHLKGSSSV 660 GLNNDGEEPD VSWVQSLVKE SPPEMNKPAA STSGAAPSGE CLKPNSQIDS IDHSVLGAWL 720 EQMQLDQLVA

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence

MCSGPEQSNS NSSTIQAADV IQSKNMKDMS KLSVETEDSF SSLLEYAANN DVEAFKRSIE  60
LDLSAVDEAG LWYVRKKGSK QITQEERTPL MVAATYGSVD VLKLIVALPE VDLNRLCGQD  120
KWTALHCAAS GGSVNVLDVA KLLLSAGADP NIEDAFGRRP VDVIVLPPKL PGAKAALEDL  180
LMSNTSDGSV GYSNLQVSIT TSNASSPVLS SSPRSSSPSS PADSSSPRAP KFSDVPANSV  240
SEKKQYPVDP SLPDIRNSIY STDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP  300
RKYHYSCVPC PDFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTS CARQVCFFAH  360
TQEELRPLYV STGSGVPSPR SAASGAGFMD MAAALNLVPG SPTSHSVMSP SAFNQTLSPT  420
ANGMPHSSAA WPPPNVPTLH LPGSNLQSSR LRSSLSARDL PPEDLNMLQD FDAQQLVLND  480
LACFSQSRPS SAMLNRSGRS KPTLTPSNLE ELFSSEISSS PRFSDQAVAS GVFSPTHKSA  540
VLNQFQQQQS MLSPVNTNVF SPRNIEHPLL QGPFGVSSPR MSPRSLETAT PMSARLSALA  600
QREKQPQQMP SLSSRDLVAN RAPTNGPPVT AWAKWGSPNG KADWSVNGDD LGHLKGSSSV  660
GLNNDGEEPD VSWVQSLVKE SPPEMNKPAA STSGAAPSGE CLKPNSQIDS IDHSVLGAWL  720
EQMQLDQLVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein