PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PIN25756.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 158aa MW: 17337.5 Da PI: 8.2077 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.9 | 1.1e-10 | 63 | 85 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C++f rtG C+yGd+Ck+ H++ PIN25756.1 63 ICNRFVRTGSCQYGDSCKYYHPK 85 7********************96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 158 aa Download sequence |
MPLGKYYCDY CDKQFQDTPA ARRRHLQGVV HQRAKALWYD AVRSSAHLGL DQVQDPQSIG 60 KGICNRFVRT GSCQYGDSCK YYHPKKNVPN MDTQGTEGTS FVNNAQSQGI PGSLLHGEAS 120 LPAVLFGNQM GASLGNLPPS LWPPPEGGYP PLPFIDWG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G26749.1 | 1e-31 | C3H family protein |