PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN25316.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family GRAS
Protein Properties Length: 658aa    MW: 75702.1 Da    PI: 6.0187
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN25316.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS359.45.2e-1102846542374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++ L++c+eavss + ++ ++lL+++++++sp+gd+++Rla++f++AL+ar+++++s ly a++ ++ +    +e l+++++++ +sP+ ++s++ aN+
  PIN25316.1 284 TSMLTRCVEAVSSFNITAGEKLLNQIRQHCSPHGDANERLAHCFANALEARMTGTGSALYTAFARKRIP---AAELLKSYQAYVTASPFKRMSNIFANK 379
                 678**********************************************************99999998...9************************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                  I + + ++++vHiiDf+i +G+QWp++++ ++ Rp+gpp l+iTg++ p++g   +e++e+tg+rL +++++++vpfe+n+ +ak+++d++l++L+++
  PIN25316.1 380 SIGRYTMEASKVHIIDFGILYGFQWPCIIHGISLRPGGPPFLKITGIDFPQPGfkPAERIEQTGRRLMNYCQRFNVPFEYNA-IAKKWDDIRLDDLKIE 477
                 ****************************************************999***************************.7*************** PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 ++E+++Vn+ ++l ++ des+ ++s+rd+vLkl+k+++P+++v+   +  +n++ F +rf eal +ys++fd++ea+lpre+++r  +Ere++gr+++n
  PIN25316.1 478 RDEMVVVNCLYRLGQVADESAGVNSPRDAVLKLIKEINPDLFVHGVINGTYNAPLFPTRFREALFHYSSFFDMMEATLPREDQDRLLYEREVFGRDVMN 576
                 *************************************************************************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 v+aceg+er+er et+++W+ r +++GF+++pl+ ++  ++k+ + + + + +  +e+ +++++gWk+r ++++S+W+
  PIN25316.1 577 VIACEGSERIERPETYKQWQVRNQRVGFRQLPLNREILREVKTKVLRDYHNDFLSDEDGEWMLQGWKGRVMYALSCWK 654
                 *****************************************98766555566*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    
MGTLSHDHRD SRNGLEFAHS NLEAQCGIYD HRFTDISEIR KGSISQHQTN PNPGDDGAPV  60
ACDYFGGVYD YIKQMLMEED DLEDRPCMFQ DCSALQAAEK YFYDALSDKS SAHINGNSDL  120
NRPGSSFPPW SLMESQNCEE GIYQVVNFTS NSEEGHEISQ PSFYEINEPI ERNVQVAAGE  180
KENSPKKTHD REENRDCEEE RNIKQLAGYA EESVQMEQYD KSLLCPKMNP GFYSESSSCQ  240
SEEISEESEE EKRKRQYRKT KEVKRGRPKG SKKNRARREV IDLTSMLTRC VEAVSSFNIT  300
AGEKLLNQIR QHCSPHGDAN ERLAHCFANA LEARMTGTGS ALYTAFARKR IPAAELLKSY  360
QAYVTASPFK RMSNIFANKS IGRYTMEASK VHIIDFGILY GFQWPCIIHG ISLRPGGPPF  420
LKITGIDFPQ PGFKPAERIE QTGRRLMNYC QRFNVPFEYN AIAKKWDDIR LDDLKIERDE  480
MVVVNCLYRL GQVADESAGV NSPRDAVLKL IKEINPDLFV HGVINGTYNA PLFPTRFREA  540
LFHYSSFFDM MEATLPREDQ DRLLYEREVF GRDVMNVIAC EGSERIERPE TYKQWQVRNQ  600
RVGFRQLPLN REILREVKTK VLRDYHNDFL SDEDGEWMLQ GWKGRVMYAL SCWKPWKG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-167GRAS family protein