PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN25179.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

HD-ZIP

Protein Properties

Length: 373aa MW: 40533.8 Da PI: 4.9958

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN25179.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.9	1.5e-17	202	256	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k PIN25179.1 202 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 256 778899***********************************************98 PP
2	HD-ZIP_I/II	128	3.9e-41	202	292	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk PIN25179.1 202 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELR-ALK 292 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MELGLSLGDA SKSFGFLKDN KIQQEPTKKK SSLDFCMDLG LSSSGGGNQE KTQKSDENGE 60 ENGEDDDDET SEGDGSDENQ GEAPVQLNLL PLAPVPRQIS SNLPWSSDNG SSENGSSGNM 120 GLPAARGLDV NRLPGAAEEV SSANSVGSPF QMDFGVYRNT GNGNLQLGGN KRDFEATGND 180 AVEAERASSR ASDDDENGLN TRKKLRLSKE QSAFLEESFK EHNTLNPKQK LALAKQLNLR 240 PRQVEVWFQN RRARTKLKQT EVDCEYLKRC CETLTEENRR LHKELQELRA LKTSNPFYMQ 300 LPATTLTMCP SCERVATAST AAGPPPATTN AAVTIAATTA KTTAIDATPK AIPFPLNRPR 360 FYPFSQGPTH SNS

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MELGLSLGDA SKSFGFLKDN KIQQEPTKKK SSLDFCMDLG LSSSGGGNQE KTQKSDENGE  60
ENGEDDDDET SEGDGSDENQ GEAPVQLNLL PLAPVPRQIS SNLPWSSDNG SSENGSSGNM  120
GLPAARGLDV NRLPGAAEEV SSANSVGSPF QMDFGVYRNT GNGNLQLGGN KRDFEATGND  180
AVEAERASSR ASDDDENGLN TRKKLRLSKE QSAFLEESFK EHNTLNPKQK LALAKQLNLR  240
PRQVEVWFQN RRARTKLKQT EVDCEYLKRC CETLTEENRR LHKELQELRA LKTSNPFYMQ  300
LPATTLTMCP SCERVATAST AAGPPPATTN AAVTIAATTA KTTAIDATPK AIPFPLNRPR  360
FYPFSQGPTH SNS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	207	TRKKLRL
2	251	259	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	5e-64	HD-ZIP family protein