PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN25178.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C3H

Protein Properties

Length: 280aa MW: 30543.5 Da PI: 9.2791

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN25178.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.3	8.5e-06	37	60	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C+ f+ t C yGd C++ H PIN25178.1 37 KSKPCKKFFSTSGCTYGDACHYQH 60 778********************9 PP
2	zf-CCCH	18.1	4.9e-06	109	122	14	27
--TTTTT-SS-SSS CS zf-CCCH 14 tCkyGdrCkFaHgp 27 C+yGd+C+FaH++ PIN25178.1 109 GCRYGDKCHFAHSE 122 5***********95 PP
3	zf-CCCH	32.5	1.5e-10	247	271	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk++ C +f++ G C++G+rC+FaH+ PIN25178.1 247 YKRKMCENFYK-GSCNFGERCHFAHS 271 9********.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence
MDFGRKRGRP DAAFHDGGGF KKSKEAMDSF TTGVGSKSKP CKKFFSTSGC TYGDACHYQH 60 YAPGYSAHAQ LANLGGNDAV PAGRNAGFTD SPAPTMKTKL CNKINTPEGC RYGDKCHFAH 120 SEMEFSNRHE GSRMMGPVGG FSQRLELSQR GLPMCNFGAS ATAKISIDAS LAGPIIGKNG 180 VNSKQICRET GVKLYIKDHD TDPNQKNIEL EGSFDQIKEA SSMVRHLIIK ISASGRAEKS 240 MPPPNHYKRK MCENFYKGSC NFGERCHFAH SVSELRNPLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	3e-70	C3H family protein