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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PIN24958.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 283aa MW: 32432.5 Da PI: 5.9382 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 56.1 | 6.3e-18 | 84 | 137 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k
PIN24958.1 84 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 137
456899***********************************************9 PP
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| 2 | HD-ZIP_I/II | 129.5 | 1.3e-41 | 83 | 173 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+++alk+en++L++++++L++e+
PIN24958.1 83 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEALKAENDALQAQNQKLHAEI 173
69**************************************************************************************987 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 283 aa Download sequence |
MTCSTQMAFF HPNFMLQTPQ EDDHNQPSTS ILPSCNPQEF HGVASLLGKR ASMSFSTRID 60 VCEELNNNHG EDELSDDGSQ VGEKKRRLNM EQVKTLEKNF ELGNKLEPER KMQLARALGL 120 QPRQIAIWFQ NRRARWKTKQ LEKDYDLLKR QFEALKAEND ALQAQNQKLH AEILALKTRE 180 PTESINLNKE TEGSCSNRSE NSSEIKLEIS RTPAIDSPVL AEHPNRPLFP SLLSRPINGV 240 AQRPEIQGPK MDQTVKEESL SNMFCGMDDH TGFWPWLEQQ NFN |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 132 | 140 | RRARWKTKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G69780.1 | 1e-120 | HD-ZIP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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