PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN24818.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | LSD | ||||||||
Protein Properties | Length: 176aa MW: 18107 Da PI: 8.0823 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 38.6 | 1.7e-12 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCrt+L YP GA++V+Ca+C+ V PIN24818.1 7 CSGCRTVLLYPSGATNVCCAVCNMV 31 ***********************98 PP | |||||||
2 | zf-LSD1 | 39.4 | 9.8e-13 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ rGA+sVRC++C+tV PIN24818.1 46 CGGCRTLLMQARGATSVRCSCCHTV 70 ************************9 PP | |||||||
3 | zf-LSD1 | 49 | 1e-15 | 87 | 111 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+++ PIN24818.1 87 CGNCHTMLMYPAGAPSVKCAICHFI 111 ***********************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence |
MQSQLVCSGC RTVLLYPSGA TNVCCAVCNM VNAVPPAGME MAQLICGGCR TLLMQARGAT 60 SVRCSCCHTV NLVPAAPTPN NVAHVNCGNC HTMLMYPAGA PSVKCAICHF ITNVNMGDTR 120 VPIPVHRPGG NSTSASTPST STATANAQNQ TVVVQNPMTV DESGKLVSNV VVGVTT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.2 | 1e-50 | LSD family protein |