PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN24808.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family Trihelix
Protein Properties Length: 334aa    MW: 37397.4 Da    PI: 9.7132
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN24808.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.22.2e-1823109285
    trihelix   2 WtkqevlaLiearremeerlr...rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                 Wt qe+++Liea++ +eer     rgk ++ +W++v +++++ g+ rs++qC++kw+nl +++kk++e e++  +es  +++ + ++
  PIN24808.1  23 WTLQETMVLIEAKKMDEERRMkseRGKPAELRWKWVEDYCWRNGCFRSQNQCNDKWDNLMRDFKKVREYERRIMAESGGEVKSYWRI 109
                 **************88888773335789999****************************************9877776666666665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MDLRISNQSG NINEPRDYRK GNWTLQETMV LIEAKKMDEE RRMKSERGKP AELRWKWVED  60
YCWRNGCFRS QNQCNDKWDN LMRDFKKVRE YERRIMAESG GEVKSYWRIE KNERKERNLP  120
SNMLPQIYEG LMDVMEKKGQ RVVVGGGAGS GSSSANVPTT LAEKSAVVSG QYAMPTPVQQ  180
QAVPVIQSPP MLPPFAPPAR AQPLTMPFSQ PSPPTLSSLR LWSLVSPSGR FSSFSPLAPG  240
EGTSGAAEGT TLQEVGSAIS KSASIIAEAI QSCEEREERR HRQMLSLHER RLQIEESKAE  300
INRQGINGLV DAINKLANSI LALASNKNQT SSSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.13e-56Trihelix family protein