PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN24304.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family C3H
Protein Properties Length: 527aa    MW: 58251.2 Da    PI: 5.2279
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN24304.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.71.7e-12201224427
                 ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                 e C ++++tG Ck+G +CkF+H+p
  PIN24304.1 201 EDCAYYMKTGSCKFGLNCKFNHPP 224
                 89********************97 PP

2zf-CCCH27.65e-09247270326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 + +C++++ +G C+yG  Ck++Hg
  PIN24304.1 247 QTECKYYLTSGGCRYGKDCKYSHG 270
                 568********************9 PP

3zf-CCCH37.34.6e-12292316226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 ++++C++++r+G CkyG++C+F+H+
  PIN24304.1 292 GEKECHYYMRNGSCKYGSNCRFHHP 316
                 7899********************9 PP

4zf-CCCH29.21.6e-09428454127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C+ff++tG Ck+ ++CkF+H++
  PIN24304.1 428 PGEPECSFFLKTGDCKFKSNCKFHHPK 454
                 5799*********************96 PP

5zf-CCCH34.14.5e-11477501226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 ++++C +++r+G+CkyG+ Ck+ H+
  PIN24304.1 477 DEPICTHYHRFGICKYGPACKYDHP 501
                 789*********************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    
MSESRASSTS DKPPSEKLGL GSLVSVTAPF DPMTTDTAIQ PSGLSQNTPD AGSDPMPDGA  60
AEGVQKEVFP TYDEAEVANS IERELLQLSI VHAEIDAALE RLEAEVEGKD VRTVKNENLD  120
EEKNGKDGES AEEDNDGREE GNDIKMVRND DHEDPVEEGN DYCDVQDDIE GQSGELVTNL  180
GRHNHSHDRK RINYPMRPDA EDCAYYMKTG SCKFGLNCKF NHPPRRKSQS TKEKGKQREE  240
NSEKAGQTEC KYYLTSGGCR YGKDCKYSHG LDKSSASHDL ELNFLGLPIR PGEKECHYYM  300
RNGSCKYGSN CRFHHPDPKT VMGGGSPSGY DNGGSLPSQL ISSSSISSWS SPRAFTDTSP  360
FVPVVFPPTQ GAPTPSPEWN GYQAAAYPTS ERSLPTPPAF AINNLPIETN FPVQHQRDMV  420
LEEYPERPGE PECSFFLKTG DCKFKSNCKF HHPKNRNSKA KAKAFALNDK GLPLRPDEPI  480
CTHYHRFGIC KYGPACKYDH PSKFAVSPPS FDEPPYSKIV GGAEQDR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-104C3H family protein