PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN24304.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | C3H | ||||||||
Protein Properties | Length: 527aa MW: 58251.2 Da PI: 5.2279 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.7 | 1.7e-12 | 201 | 224 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C ++++tG Ck+G +CkF+H+p PIN24304.1 201 EDCAYYMKTGSCKFGLNCKFNHPP 224 89********************97 PP | |||||||
2 | zf-CCCH | 27.6 | 5e-09 | 247 | 270 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C++++ +G C+yG Ck++Hg PIN24304.1 247 QTECKYYLTSGGCRYGKDCKYSHG 270 568********************9 PP | |||||||
3 | zf-CCCH | 37.3 | 4.6e-12 | 292 | 316 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G CkyG++C+F+H+ PIN24304.1 292 GEKECHYYMRNGSCKYGSNCRFHHP 316 7899********************9 PP | |||||||
4 | zf-CCCH | 29.2 | 1.6e-09 | 428 | 454 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+ff++tG Ck+ ++CkF+H++ PIN24304.1 428 PGEPECSFFLKTGDCKFKSNCKFHHPK 454 5799*********************96 PP | |||||||
5 | zf-CCCH | 34.1 | 4.5e-11 | 477 | 501 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C +++r+G+CkyG+ Ck+ H+ PIN24304.1 477 DEPICTHYHRFGICKYGPACKYDHP 501 789*********************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 527 aa Download sequence |
MSESRASSTS DKPPSEKLGL GSLVSVTAPF DPMTTDTAIQ PSGLSQNTPD AGSDPMPDGA 60 AEGVQKEVFP TYDEAEVANS IERELLQLSI VHAEIDAALE RLEAEVEGKD VRTVKNENLD 120 EEKNGKDGES AEEDNDGREE GNDIKMVRND DHEDPVEEGN DYCDVQDDIE GQSGELVTNL 180 GRHNHSHDRK RINYPMRPDA EDCAYYMKTG SCKFGLNCKF NHPPRRKSQS TKEKGKQREE 240 NSEKAGQTEC KYYLTSGGCR YGKDCKYSHG LDKSSASHDL ELNFLGLPIR PGEKECHYYM 300 RNGSCKYGSN CRFHHPDPKT VMGGGSPSGY DNGGSLPSQL ISSSSISSWS SPRAFTDTSP 360 FVPVVFPPTQ GAPTPSPEWN GYQAAAYPTS ERSLPTPPAF AINNLPIETN FPVQHQRDMV 420 LEEYPERPGE PECSFFLKTG DCKFKSNCKF HHPKNRNSKA KAKAFALNDK GLPLRPDEPI 480 CTHYHRFGIC KYGPACKYDH PSKFAVSPPS FDEPPYSKIV GGAEQDR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.1 | 1e-104 | C3H family protein |