PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN22971.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C3H

Protein Properties

Length: 861aa MW: 94075.9 Da PI: 5.988

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN22971.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18	5.3e-06	432	452	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +Cr++++ G C+ G++C+F+H+ PIN22971.1 432 PCRHYLQ-GRCHEGEKCNFSHD 452 8****.***********6 PP
2	zf-CCCH	22.1	2.7e-07	486	506	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+++ +G+C++G+ C F+H PIN22971.1 486 PCDNYTTNGFCSRGSDCLFSH 506 7******************** PP

Sequence ? help Back to Top
Protein Sequence Length: 861 aa Download sequence
MEDPSPTQNL SLNSSETAFS FPPHRRRPLR SRTYHALIGI LSHCRTDWPQ QNPQENGLCT 60 RNEANLADIL APLPNSKESA DTLYQQTSVG ENKNSIVFQD GDSDSTQASV PGLDLVNLVK 120 SGEQEVVPAS RISVEDFSMV ENQTGDCAIQ IAMEQENANS VLDMQMDEFG TLEELEVDED 180 FSIHEFSEAL NSCFGPDVVV ESSKAGEDSQ GNGTLLEENI PKTAEHELQL NEMELEKLLY 240 NSGAVEPSCC LNADEEIEEG EIAGAVGAVF EDAVSLGERT TERVHASEDP CGKEKVTCNE 300 EDRGQLRHEM SDPSLVNILN IDSNCMEVES RTAARLQDYH SQDVFHDGQM EAQRSGPMTP 360 CLENLTANGR ILQGNAAESR TPAAAEKDDD AKKKKRRRGP LTKERKDKKK NRKLGVRKLK 420 LKPILKPMIK TPCRHYLQGR CHEGEKCNFS HDAVPLTKSQ PCRYFACHTC MKGDDCPFDH 480 QLSKYPCDNY TTNGFCSRGS DCLFSHEIPA KQSFLVTPNV SKPELTGIKG GSSTISKFTK 540 PEVKFPSQLN NSNSSKHTDN SGIFHQKVDA KFSSAGNSPG MSAELVGAKP VPRTTGLTPK 600 GVSFLSNGGM SLVDSSRHKR DTSVKDNVGI DVSCKTILKM PGNVNKLSNM SDGVAPRKPR 660 GINFLSFTHP SSDGSGGEMF SDLLSNSNNE ARKSVLDDMG KGELACSLPQ SVGMLKVNRQ 720 MNQSATNLVP ASNEKVNGTP SRVPQHINFL NFDRISADVA ILKEGGKSPS SKDETALSFV 780 KERRNTQGDL QEATKRPSLS FDELTGQSTI GHNANLSTYF KTSLLSNTPS SVQKAVQSAL 840 SFAAKFESNI KVGSSLHQQR S

Sequence ? help Back to Top

Protein Sequence Length: 861 aa Download sequence

MEDPSPTQNL SLNSSETAFS FPPHRRRPLR SRTYHALIGI LSHCRTDWPQ QNPQENGLCT  60
RNEANLADIL APLPNSKESA DTLYQQTSVG ENKNSIVFQD GDSDSTQASV PGLDLVNLVK  120
SGEQEVVPAS RISVEDFSMV ENQTGDCAIQ IAMEQENANS VLDMQMDEFG TLEELEVDED  180
FSIHEFSEAL NSCFGPDVVV ESSKAGEDSQ GNGTLLEENI PKTAEHELQL NEMELEKLLY  240
NSGAVEPSCC LNADEEIEEG EIAGAVGAVF EDAVSLGERT TERVHASEDP CGKEKVTCNE  300
EDRGQLRHEM SDPSLVNILN IDSNCMEVES RTAARLQDYH SQDVFHDGQM EAQRSGPMTP  360
CLENLTANGR ILQGNAAESR TPAAAEKDDD AKKKKRRRGP LTKERKDKKK NRKLGVRKLK  420
LKPILKPMIK TPCRHYLQGR CHEGEKCNFS HDAVPLTKSQ PCRYFACHTC MKGDDCPFDH  480
QLSKYPCDNY TTNGFCSRGS DCLFSHEIPA KQSFLVTPNV SKPELTGIKG GSSTISKFTK  540
PEVKFPSQLN NSNSSKHTDN SGIFHQKVDA KFSSAGNSPG MSAELVGAKP VPRTTGLTPK  600
GVSFLSNGGM SLVDSSRHKR DTSVKDNVGI DVSCKTILKM PGNVNKLSNM SDGVAPRKPR  660
GINFLSFTHP SSDGSGGEMF SDLLSNSNNE ARKSVLDDMG KGELACSLPQ SVGMLKVNRQ  720
MNQSATNLVP ASNEKVNGTP SRVPQHINFL NFDRISADVA ILKEGGKSPS SKDETALSFV  780
KERRNTQGDL QEATKRPSLS FDELTGQSTI GHNANLSTYF KTSLLSNTPS SVQKAVQSAL  840
SFAAKFESNI KVGSSLHQQR S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	392	397	KKKKRR
2	392	398	KKKKRRR
3	392	410	KKKKRRRGPLTKERKDKKK
4	392	413	KKKKRRRGPLTKERKDKKKNRK
5	392	422	KKKKRRRGPLTKERKDKKKNRKLGVRKLKLK
6	393	399	KKKKRRR
7	393	414	KKKKRRRGPLTKERKDKKKNRK
8	393	423	KKKKRRRGPLTKERKDKKKNRKLGVRKLKLK
9	393	398	KKKRRR
10	394	415	KKKKRRRGPLTKERKDKKKNRK
11	394	424	KKKKRRRGPLTKERKDKKKNRKLGVRKLKLK
12	395	416	KKKKRRRGPLTKERKDKKKNRK
13	395	425	KKKKRRRGPLTKERKDKKKNRKLGVRKLKLK
14	396	420	RRRGPLTKERKDKKKNRKLGVRKLK
15	397	414	RRGPLTKERKDKKKNRKL
16	405	413	RKDKKKNRK
17	407	414	DKKKNRKL