PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN22971.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | C3H | ||||||||
Protein Properties | Length: 861aa MW: 94075.9 Da PI: 5.988 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18 | 5.3e-06 | 432 | 452 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +Cr++++ G C+ G++C+F+H+ PIN22971.1 432 PCRHYLQ-GRCHEGEKCNFSHD 452 8******.*************6 PP | |||||||
2 | zf-CCCH | 22.1 | 2.7e-07 | 486 | 506 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+++ +G+C++G+ C F+H PIN22971.1 486 PCDNYTTNGFCSRGSDCLFSH 506 7******************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 861 aa Download sequence |
MEDPSPTQNL SLNSSETAFS FPPHRRRPLR SRTYHALIGI LSHCRTDWPQ QNPQENGLCT 60 RNEANLADIL APLPNSKESA DTLYQQTSVG ENKNSIVFQD GDSDSTQASV PGLDLVNLVK 120 SGEQEVVPAS RISVEDFSMV ENQTGDCAIQ IAMEQENANS VLDMQMDEFG TLEELEVDED 180 FSIHEFSEAL NSCFGPDVVV ESSKAGEDSQ GNGTLLEENI PKTAEHELQL NEMELEKLLY 240 NSGAVEPSCC LNADEEIEEG EIAGAVGAVF EDAVSLGERT TERVHASEDP CGKEKVTCNE 300 EDRGQLRHEM SDPSLVNILN IDSNCMEVES RTAARLQDYH SQDVFHDGQM EAQRSGPMTP 360 CLENLTANGR ILQGNAAESR TPAAAEKDDD AKKKKRRRGP LTKERKDKKK NRKLGVRKLK 420 LKPILKPMIK TPCRHYLQGR CHEGEKCNFS HDAVPLTKSQ PCRYFACHTC MKGDDCPFDH 480 QLSKYPCDNY TTNGFCSRGS DCLFSHEIPA KQSFLVTPNV SKPELTGIKG GSSTISKFTK 540 PEVKFPSQLN NSNSSKHTDN SGIFHQKVDA KFSSAGNSPG MSAELVGAKP VPRTTGLTPK 600 GVSFLSNGGM SLVDSSRHKR DTSVKDNVGI DVSCKTILKM PGNVNKLSNM SDGVAPRKPR 660 GINFLSFTHP SSDGSGGEMF SDLLSNSNNE ARKSVLDDMG KGELACSLPQ SVGMLKVNRQ 720 MNQSATNLVP ASNEKVNGTP SRVPQHINFL NFDRISADVA ILKEGGKSPS SKDETALSFV 780 KERRNTQGDL QEATKRPSLS FDELTGQSTI GHNANLSTYF KTSLLSNTPS SVQKAVQSAL 840 SFAAKFESNI KVGSSLHQQR S |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 392 | 397 | KKKKRR |
2 | 392 | 398 | KKKKRRR |
3 | 392 | 410 | KKKKRRRGPLTKERKDKKK |
4 | 392 | 413 | KKKKRRRGPLTKERKDKKKNRK |
5 | 392 | 422 | KKKKRRRGPLTKERKDKKKNRKLGVRKLKLK |
6 | 393 | 399 | KKKKRRR |
7 | 393 | 414 | KKKKRRRGPLTKERKDKKKNRK |
8 | 393 | 423 | KKKKRRRGPLTKERKDKKKNRKLGVRKLKLK |
9 | 393 | 398 | KKKRRR |
10 | 394 | 415 | KKKKRRRGPLTKERKDKKKNRK |
11 | 394 | 424 | KKKKRRRGPLTKERKDKKKNRKLGVRKLKLK |
12 | 395 | 416 | KKKKRRRGPLTKERKDKKKNRK |
13 | 395 | 425 | KKKKRRRGPLTKERKDKKKNRKLGVRKLKLK |
14 | 396 | 420 | RRRGPLTKERKDKKKNRKLGVRKLK |
15 | 397 | 414 | RRGPLTKERKDKKKNRKL |
16 | 405 | 413 | RKDKKKNRK |
17 | 407 | 414 | DKKKNRKL |