PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN22845.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family C3H
Protein Properties Length: 289aa    MW: 32014.9 Da    PI: 6.9589
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN22845.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.4e-064266126
                --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                y+t+lC+ f+  GtC+  ++C+FaH+
  PIN22845.1 42 YRTRLCCKFQL-GTCPSINNCNFAHS 66
                89*********.*************8 PP
2zf-CCCH41.42.4e-13174199126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt++C+ f  tG C+yG++CkFaHg
  PIN22845.1 174 WKTRICNKFELTGSCSYGSNCKFAHG 199
                 8************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MDSLRENGIA GGSEQPNKRA KNHLPVDLVA SNPSHCIEIM FYRTRLCCKF QLGTCPSINN  60
CNFAHSIEEL REPPPNWQEI VAAHKEEKGQ SSKSREVCLV PIMGFSDNER QGSNMEQHYT  120
EFFAEEGCPN GENCNSRHDE HPEQRESLAI YMVPGSGGGN AGNERKPTLN TSNWKTRICN  180
KFELTGSCSY GSNCKFAHGA AELRCSGGTL MNTEVKNSSI PDTKQGEVPA KASVGTLDAP  240
APSVPYSYHT GVPLQKLPNM IRKTTEVPIR RWKGPDKISK IYGDWIDEL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.12e-69C3H family protein