PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN22548.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

CO-like

Protein Properties

Length: 430aa MW: 48456.3 Da PI: 5.8853

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN22548.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	31.5	3.6e-10	26	69	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+++ +k+++++C ++ +lC++C ++ H+ H++v PIN22548.1 26 ARACDNCIKKRARWYCAADDAFLCQSCDSSVHSAnplarrHERV 69 678*****************************667888888876 PP
2	CCT	67.6	3.3e-23	373	416	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a PIN22548.1 373 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 416 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MNTHIHAKTM VSSESKLANV VVGKSARACD NCIKKRARWY CAADDAFLCQ SCDSSVHSAN 60 PLARRHERVR LKTASIKSFD GLKIHLPSWT KGFTKKPRTP RNKKNSKFSN PLRLVPEICS 120 EENSHEENEE QLLYRVPIFD PFVAELCTSS NNVQNDAEIA QGFGQESKPL SDDFGQEMNH 180 LQGFLPSEMD LAEFAADVES LLGKGLEDES FDMEGLGILD GDDDENGKES KECSLGSERV 240 KVEKEEVGEL ANHNGEFIDI GRDTFELNFD YDSPITGEEE EDNKARNFQP IVTKSFEDSN 300 KVYGSKKIFL RLDYEGVLSA WDDQKSPWTT GERPDLDSSE CWPDCLGACG TMHLYGDIGM 360 MNGHAAVIGD GGREARVSRY REKRRTRLFS KKIRYEVRKL NAEKRPRMKG RFVKRANFVA 420 PAAVFALNNK

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MNTHIHAKTM VSSESKLANV VVGKSARACD NCIKKRARWY CAADDAFLCQ SCDSSVHSAN  60
PLARRHERVR LKTASIKSFD GLKIHLPSWT KGFTKKPRTP RNKKNSKFSN PLRLVPEICS  120
EENSHEENEE QLLYRVPIFD PFVAELCTSS NNVQNDAEIA QGFGQESKPL SDDFGQEMNH  180
LQGFLPSEMD LAEFAADVES LLGKGLEDES FDMEGLGILD GDDDENGKES KECSLGSERV  240
KVEKEEVGEL ANHNGEFIDI GRDTFELNFD YDSPITGEEE EDNKARNFQP IVTKSFEDSN  300
KVYGSKKIFL RLDYEGVLSA WDDQKSPWTT GERPDLDSSE CWPDCLGACG TMHLYGDIGM  360
MNGHAAVIGD GGREARVSRY REKRRTRLFS KKIRYEVRKL NAEKRPRMKG RFVKRANFVA  420
PAAVFALNNK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	384	400	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	8e-91	CO-like family protein