PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN20897.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | C3H | ||||||||
Protein Properties | Length: 517aa MW: 55845 Da PI: 8.0709 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.8 | 1.3e-11 | 158 | 182 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++++t tCk+Gd+CkF H+ PIN20897.1 158 GEKDCAHYMQTRTCKFGDSCKFDHP 182 7889********************8 PP | |||||||
2 | zf-CCCH | 33.9 | 5.3e-11 | 210 | 234 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f++t Ck+G rCkF+H++ PIN20897.1 210 EPDCPYFLKTQRCKFGIRCKFNHPK 234 789********************96 PP | |||||||
3 | zf-CCCH | 39.4 | 9.9e-13 | 257 | 281 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG+Ck+G++CkF+H++ PIN20897.1 257 EPPCAFYMKTGQCKFGATCKFHHPK 281 79*********************96 PP | |||||||
4 | zf-CCCH | 39 | 1.4e-12 | 326 | 351 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++e C+f+++tG CkyG++C+++H+ PIN20897.1 326 PGEEDCPFYLKTGSCKYGATCRYNHP 351 5899*********************9 PP | |||||||
5 | zf-CCCH | 41.9 | 1.6e-13 | 410 | 435 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+++++tG+Ck+G++CkF+H+ PIN20897.1 410 PGQPACDYYMKTGICKFGSTCKFHHP 435 57899********************9 PP | |||||||
6 | zf-CCCH | 35.3 | 2e-11 | 469 | 490 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tG CkyG++CkF H+p PIN20897.1 469 CPYYMKTGMCKYGATCKFDHPP 490 ********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 517 aa Download sequence |
MANQLYGYTS STYGGGGGAS STLYSSRSLT DPYLSSDASL LGSSSRYLSA ESLSSSALSS 60 SMLYNPDSYS IRVSGISMTT PTHSYGPPGV DVGSTIVSTE SLYAGLKRGS SESLYYQTLL 120 GAHNKIGQTE AWYSTNPLAK RPRYESTSHL PIYPQRPGEK DCAHYMQTRT CKFGDSCKFD 180 HPIWVPEGGI PDWKEVPPVP SESLPERPSE PDCPYFLKTQ RCKFGIRCKF NHPKDRIVPP 240 GASQDGDVSV LPERPSEPPC AFYMKTGQCK FGATCKFHHP KGVHIQSAGE GNSNEVQNKI 300 FGDAMSVQSP FAPALLHNSK GLPIRPGEED CPFYLKTGSC KYGATCRYNH PDRYSINPPA 360 AAIAPSLLTS PSTHFNIGVV APTASLLPTF DPRLAQTTLG LGISIYPQRP GQPACDYYMK 420 TGICKFGSTC KFHHPVDRSA PSASVTESVQ ENVKLSLAGL PRREGAIHCP YYMKTGMCKY 480 GATCKFDHPP PGEVMVVATM QVASSSAVGE GKENGDV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-174 | C3H family protein |