PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PIN20665.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 329aa MW: 36866.4 Da PI: 6.7615 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.7 | 1.1e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++++ +G g+W++++r g+ R++k+c++rw +yl PIN20665.1 14 RGLWSPEEDEKLINYISTYGHGCWSSVPRLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.2 | 2.2e-14 | 67 | 109 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++ E l++++++ lG++ W+ Ia++++ gRt++++k++w+ PIN20665.1 67 RGSFSHSEASLIIELHRVLGNR-WAQIAKHLP-GRTDNEVKNFWN 109 899*******************.*********.***********8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 329 aa Download sequence |
MGYHTCCNKQ KVKRGLWSPE EDEKLINYIS TYGHGCWSSV PRLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SHSEASLIIE LHRVLGNRWA QIAKHLPGRT DNEVKNFWNS SIKKRLISAK 120 NSDFSTQIGS NLYQNNNFLN IPNPQIDQIC NLPITPPIAI HGFDPIEARF EQVFHTNLIP 180 HNSIPFSCLP SWPCNNNNNN YNQIFKQDQN FILDHNPICP VLENQDSSIL IDNNNNINID 240 SNNNNNNNSI KVITNEPLLE EIVGISCGIS SGNSVDYIDS FMATFASSSP TSATSPAPLP 300 AALEGFCPPP CSNDFLVNPS VASMWDPQP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13890.2 | 3e-75 | MYB family protein |