PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN20496.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 95aa MW: 10573.4 Da PI: 10.9552 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 76.1 | 2.6e-24 | 9 | 51 | 1 | 43 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 krien s rqvtfskR+ng+ KKA ELSvLCdaeva+iifs++ PIN20496.1 9 KRIENASSRQVTFSKRKNGLQKKACELSVLCDAEVALIIFSQK 51 79***************************************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence |
MVRGKVEMKR IENASSRQVT FSKRKNGLQK KACELSVLCD AEVALIIFSQ KAIKGIFTLS 60 RPEPKGPGRE IGLRIYRAQP EIELLTTRSK GISNG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11880.1 | 2e-25 | MIKC_MADS family protein |