PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PIN20049.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 449aa MW: 49036.4 Da PI: 8.2559 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.1 | 5.4e-12 | 97 | 121 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++++t tCk+Gd+CkF H+ PIN20049.1 97 GEKDCAYYMQTRTCKFGDSCKFDHP 121 7889********************8 PP | |||||||
2 | zf-CCCH | 35.1 | 2.2e-11 | 147 | 173 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t Ck+G +CkF+H++ PIN20049.1 147 PGEPDCPYFMKTQRCKFGIKCKFNHPK 173 5789*********************96 PP | |||||||
3 | zf-CCCH | 36.4 | 8.7e-12 | 196 | 220 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C f+++tG Ck+G CkF+H++ PIN20049.1 196 EPTCTFYMKTGKCKFGTACKFHHPK 220 689********************96 PP | |||||||
4 | zf-CCCH | 38.5 | 2e-12 | 262 | 287 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++e C+f+++tG CkyG++C+++H+ PIN20049.1 262 PGEEDCPFYLKTGSCKYGATCRYNHP 287 5899*********************8 PP | |||||||
5 | zf-CCCH | 39.3 | 1.1e-12 | 344 | 365 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++++tG+Ck+G++CkF+H+ PIN20049.1 344 ECDYYMKTGICKFGNNCKFHHP 365 7********************8 PP | |||||||
6 | zf-CCCH | 37.7 | 3.4e-12 | 399 | 420 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tGtCkyG++CkF H+p PIN20049.1 399 CPYYMKTGTCKYGATCKFDHPP 420 ********************96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 449 aa Download sequence |
MLYNPENYSI RIPGLSVTTP TRSYGPPGVD VGSTDSSTTS VYAGLKRTAS ESLYHPTVLS 60 AHNTIGQSEA WYTTNLLAKR PRYDNSSHLP IYPQRPGEKD CAYYMQTRTC KFGDSCKFDH 120 PIWVPEGGIP DWKEVPDVAS ESLPERPGEP DCPYFMKTQR CKFGIKCKFN HPKDKTPAVG 180 ASENGDVSVL PERPSEPTCT FYMKTGKCKF GTACKFHHPK GVQIQSAGEE NGTGMQIVDT 240 KPVQPPVTPA LLHNGKGLPI RPGEEDCPFY LKTGSCKYGA TCRYNHPNRN AAIAPSLLTS 300 PSTHFNIGVA APAASLLSSF DPRLTQTTFG LGPTIYPQRP GQMECDYYMK TGICKFGNNC 360 KFHHPIDRSA PTASAKESQQ QNVKLTLAGL PRREGAIHCP YYMKTGTCKY GATCKFDHPP 420 PGEVMAMATS QGPSAPGVGE EKNYGEDNA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12680.1 | 0.0 | C3H family protein |