PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN20049.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family C3H
Protein Properties Length: 449aa    MW: 49036.4 Da    PI: 8.2559
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN20049.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.4e-1297121226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 +++ C ++++t tCk+Gd+CkF H+
  PIN20049.1  97 GEKDCAYYMQTRTCKFGDSCKFDHP 121
                 7889********************8 PP

2zf-CCCH35.12.2e-11147173127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++ C++f++t  Ck+G +CkF+H++
  PIN20049.1 147 PGEPDCPYFMKTQRCKFGIKCKFNHPK 173
                 5789*********************96 PP

3zf-CCCH36.48.7e-12196220327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++ C f+++tG Ck+G  CkF+H++
  PIN20049.1 196 EPTCTFYMKTGKCKFGTACKFHHPK 220
                 689********************96 PP

4zf-CCCH38.52e-12262287126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +++e C+f+++tG CkyG++C+++H+
  PIN20049.1 262 PGEEDCPFYLKTGSCKYGATCRYNHP 287
                 5899*********************8 PP

5zf-CCCH39.31.1e-12344365526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C+++++tG+Ck+G++CkF+H+
  PIN20049.1 344 ECDYYMKTGICKFGNNCKFHHP 365
                 7********************8 PP

6zf-CCCH37.73.4e-12399420627
                 -SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                 C+++++tGtCkyG++CkF H+p
  PIN20049.1 399 CPYYMKTGTCKYGATCKFDHPP 420
                 ********************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    
MLYNPENYSI RIPGLSVTTP TRSYGPPGVD VGSTDSSTTS VYAGLKRTAS ESLYHPTVLS  60
AHNTIGQSEA WYTTNLLAKR PRYDNSSHLP IYPQRPGEKD CAYYMQTRTC KFGDSCKFDH  120
PIWVPEGGIP DWKEVPDVAS ESLPERPGEP DCPYFMKTQR CKFGIKCKFN HPKDKTPAVG  180
ASENGDVSVL PERPSEPTCT FYMKTGKCKF GTACKFHHPK GVQIQSAGEE NGTGMQIVDT  240
KPVQPPVTPA LLHNGKGLPI RPGEEDCPFY LKTGSCKYGA TCRYNHPNRN AAIAPSLLTS  300
PSTHFNIGVA APAASLLSSF DPRLTQTTFG LGPTIYPQRP GQMECDYYMK TGICKFGNNC  360
KFHHPIDRSA PTASAKESQQ QNVKLTLAGL PRREGAIHCP YYMKTGTCKY GATCKFDHPP  420
PGEVMAMATS QGPSAPGVGE EKNYGEDNA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0C3H family protein