PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN19773.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family M-type_MADS
Protein Properties Length: 251aa    MW: 27357.9 Da    PI: 4.946
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN19773.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.55.3e-212472149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k+ien snrqvtfskRr g++KKA+EL++L +ae+a+i+ s   +++ +
  PIN19773.1 24 KKIENLSNRQVTFSKRRVGLFKKASELCILSGAEIAIIVHSLGKRVFSF 72
                68*************************************9977776655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MVILKEGNSM VKKTTQGRKK IEIKKIENLS NRQVTFSKRR VGLFKKASEL CILSGAEIAI  60
IVHSLGKRVF SFGHPTADSV IERFLGGAEG AASAERENCP TPNTRDYNRH YSEVCKELEA  120
EKRRREIIEE AKRLEGYGCG GLAGEGLWWD EEVDGLDLEE LEQYAAALDE LVKNVTMRAD  180
DLMLIQSANS LPGPPPPPPA AVASTAVTGA DVDAASCSWD DTTAFVNQNQ LSYGLDYGNC  240
ILPHGFGAGQ L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-29M-type_MADS family protein